Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_I10
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 30 1.9
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 30 1.9
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 3.3
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609... 29 4.3
03_02_0474 - 8759585-8759626,8759753-8759893,8760001-8760093,876... 29 4.3
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 5.7
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.7
07_03_0846 - 21983581-21986055 29 5.7
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 29 5.7
09_06_0315 - 22246879-22247643,22247722-22247862,22248509-222485... 28 7.5
01_06_0695 - 31292622-31293317 28 7.5
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 86 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 214
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = -2
Query: 590 EAKFAKRWIVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILL 465
EA A+ VHP+ + VR S DRL+ PY L VA +LL
Sbjct: 563 EAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 712 YKEFLARG-ARKVPPGITGLWQPSVHSDVAFD 620
YK F A G RKV GIT + PS+ D+AFD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 354 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETLRRSPFGS 220
A+ A +GK + E E S+QCD T + +S RE +R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREK-KRNPYAA 473
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 441 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 343
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.5 bits (63), Expect = 3.3
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Frame = +2
Query: 17 LSSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 196
L +DESP A S R PS RQ++++ D R + E P V K
Sbjct: 492 LGRADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSK 547
Query: 197 KTDSIDLRDPNGL----RRSVSRFECETRLVKSHCLEPP 301
+ PN +VSR E ET+ K + + P
Sbjct: 548 LEGETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
>07_03_1140 -
24258627-24258849,24259967-24260089,24260200-24260921,
24260945-24261073,24261484-24261714
Length = 475
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 651 CHKPVXPGGTFLAPLAK 701
C KP+ P GT +APL K
Sbjct: 307 CRKPIIPSGTMVAPLVK 323
>03_02_0474 -
8759585-8759626,8759753-8759893,8760001-8760093,
8760194-8760352
Length = 144
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 596 DRKSRHRRIKGNVAMNAWLPQA 661
D RH KGN A N W+P A
Sbjct: 108 DASERHASCKGNPATNEWIPSA 129
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +2
Query: 23 SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 202
S +SPG L R HD +L KSST + R E SR +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787
Query: 203 DSID 214
+S++
Sbjct: 788 ESVE 791
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 501 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 337
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 336 GKDMLTVEPRESGGSK 289
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 DLRD-PNGLRRSVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 361
DL+D G +R+V +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVP-LQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 335 ARICSLWSPESREALNNVTLLVAFRIQNARRYVEA 231
AR C W PESR ++ V ++A ++R++ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>09_06_0315 -
22246879-22247643,22247722-22247862,22248509-22248561,
22248755-22248919,22249685-22249799,22249937-22250025,
22250578-22250608
Length = 452
Score = 28.3 bits (60), Expect = 7.5
Identities = 20/100 (20%), Positives = 45/100 (45%)
Frame = -1
Query: 774 WLIQMFSTHRDCESPAYRSFSIKSF*QEVPEKYHQX*LACGSQAFIATLPLILRCRLFLS 595
WL+ + ++HR+ S++ V + + A ++ F+ +LR + LS
Sbjct: 214 WLLVLRNSHREVNGQIVEVESLRCVLLSVAKSLERLGAAAPTEEFLQQTKYLLRLQEGLS 273
Query: 594 LRSKIRQALDCSPIKRERELG*TVVRQVSFTLLMACRCDS 475
+ + ++ + ++ E+EL V R + L M + D+
Sbjct: 274 IGLQSLDLMESAFLRLEQELVKNVARTANHVLEMQDKQDA 313
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 38 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 172
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,943,919
Number of Sequences: 37544
Number of extensions: 512397
Number of successful extensions: 1373
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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