Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_I08
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 102 7e-23
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 101 1e-22
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.98
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 1.7
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 26 5.2
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 5.2
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 9.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 9.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 102 bits (244), Expect = 7e-23
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Frame = -1
Query: 624 GGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 445
GGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+ ++
Sbjct: 243 GGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIV 302
Query: 444 RAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAVLELRRRKNLKALAD 289
+A RV RA +K NPL N + +LNPYA KA ++L K KA +
Sbjct: 303 KAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 101 bits (242), Expect = 1e-22
Identities = 54/114 (47%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Frame = -1
Query: 624 GGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 445
GGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+ ++
Sbjct: 243 GGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIV 302
Query: 444 RAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAVLELRRRKNLKALAD 289
+A RV RA +K NPL N + +LNPYA KA +++ K KA +
Sbjct: 303 KAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.98
Identities = 27/109 (24%), Positives = 46/109 (42%)
Frame = -1
Query: 537 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 358
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 357 AAVLKRKAVLELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 211
+ ++ + + L ++ L+KRN K + RK
Sbjct: 788 PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 355 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 516
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = -1
Query: 471 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAVLELRRRKNLKA-- 298
+S + + +K+ IR R+L+P ++ + N Y+ + + ++ R R
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717
Query: 297 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 208
L ++E G + +PA + + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 5.2
Identities = 27/111 (24%), Positives = 47/111 (42%)
Frame = -1
Query: 549 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 370
+ P K +K P+ + T +DE+ + L + V+ ++L+P K L
Sbjct: 103 EVPRKVRKE-QKPRRRRGKRSSTVDALNDELNE-LGENEEEVLTEQKQLDPTLAAKKELD 160
Query: 369 LNPYAAVLKRKAVLELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 217
L AVLK + NL+ +AD E L+ R A++ +L +
Sbjct: 161 LQ-MDAVLKPTRTKKRSNEDNLEQMADDEVLRLREQMRLAALRDAELNSEQ 210
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 614 LDVSSFGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 480
+D+ S LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.1
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -1
Query: 489 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAVLELRRR 313
++T LK DE+RK+ N + L + +++ + L+ + K + +EL
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422
Query: 312 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 214
N LA+ E LKL + + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 9.1
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -1
Query: 423 IRATRKLNPLTNNKAMLKLNPYAAVLKRKAVLELRRRKNLKALADAEKSGLKLSKRNPAM 244
I+ +K+N L + L+ ++ L+ K LR+ L+ + D +K KLSK M
Sbjct: 865 IKLMKKVNILESRLLSNPLHNFSE-LEEKYAEYLRKLALLEEVKDLKK---KLSKARSIM 920
Query: 243 KAEKLRERRR 214
+ ++L R+R
Sbjct: 921 QLDELNSRKR 930
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.1
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Frame = -1
Query: 549 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 370
KTPS +K+ P P + N D L ++ V + P+ + TR + P ++ +
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS--APQVTRLMAPQDSSSVVTP 643
Query: 369 -----LNPYAAVLKRKAVLELRRRKNLKALADAEKS 277
L+P AV K ++ + A AD E +
Sbjct: 644 SPTSLLDPARAVRKVIDGIDPPKEAGAGATADVESA 679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,349
Number of Sequences: 5004
Number of extensions: 40318
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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