Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_I08
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 120 1e-27
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 116 3e-26
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.3
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 3.1
02_04_0073 - 19471254-19472681 29 4.1
10_08_0684 - 19870715-19872994 28 7.2
04_04_1266 + 32239451-32239829,32239874-32239884 28 7.2
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 28 7.2
08_02_0934 + 22747742-22748644 28 9.5
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.5
03_03_0122 - 14617879-14618871 28 9.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 120 bits (290), Expect = 1e-27
Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 1/119 (0%)
Frame = -1
Query: 624 GGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 445
GGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V+
Sbjct: 248 GGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVV 307
Query: 444 RAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAVL-ELRRRKNLKALADAEKSGL 271
+ NK V R ++ NPL N A+LKLNPY ++ A L E R K K D++++ L
Sbjct: 308 KPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 116 bits (278), Expect = 3e-26
Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Frame = -1
Query: 624 GGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVL 445
GGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V+
Sbjct: 247 GGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVV 306
Query: 444 RAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAVL-ELRRRKNLKALADAEKSGLK 268
+ NK V + NPL N A+LKLNPY ++ A L E R K D++++ L
Sbjct: 307 KPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLS 366
Query: 267 LSKRNPAMKAEK 232
+ + A K
Sbjct: 367 PEESSKIKAAGK 378
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 364 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 453
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -1
Query: 549 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 382
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 381 AMLKLNPYAAVLKRKAVLELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 214
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 590 SPHSAGLTPYSGHGRHHRNKR 528
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>10_08_0684 - 19870715-19872994
Length = 759
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 633 GFRGGHLGRFVIWTQSAFGR 574
GF G HLG W+ S FGR
Sbjct: 126 GFLGLHLGNEAFWSHSGFGR 145
>04_04_1266 + 32239451-32239829,32239874-32239884
Length = 129
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -2
Query: 611 DVSSFGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFS 471
D SF SP LT Y R R +ST S WPT ++HV S
Sbjct: 39 DRPSFKTSPSRKTLTNY----RRTRVNYTSSTRQSISWPTASTHVLS 81
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 621 GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 490
G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 675 GCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>08_02_0934 + 22747742-22748644
Length = 300
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = -2
Query: 587 PHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV-LPTNA*SVLH 411
P++A Y GH HHR T+ P S S SG S+ P N V
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210
Query: 410 AN*TRSPITRRC 375
A R P C
Sbjct: 211 AGMWRLPAAASC 222
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 612 GRFVIWTQSAFGRL-DPLFGSWK 547
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 612 GRFVIWTQSAFGRL-DPLFGSWK 547
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,023,196
Number of Sequences: 37544
Number of extensions: 305253
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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