Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I08
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   3e-21
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    29   4.9  
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    29   4.9  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   6.4  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
 Frame = -1

Query: 699 RAFRXIPRCGXXXXXXXXXXXAGFRGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKN 523
           RAFR IP                  GGHLGR +IWT+SAF +LD ++G+    S Q KK 
Sbjct: 218 RAFRNIPGVDVMNVERLNLLKLA-PGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKG 276

Query: 522 FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK 343
           +++P P MAN+D +R+++S+E+ K +RAP K  +      NPL     + KLNPYA++L+
Sbjct: 277 WSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILR 336

Query: 342 RKAVLELRR 316
           + +   +++
Sbjct: 337 KASKANVKK 345


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -1

Query: 393 TNNKAMLKLNPYAAVLKRKAVLELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 214
           T++ +  K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411

Query: 213 K 211
           +
Sbjct: 412 E 412


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 587 PHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSVLPTNA*SV 417
           P+S   TP S     G+ HR     S      +PT+     SS+M S  S  LP+ + S 
Sbjct: 540 PYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIRLPSTSFSN 599

Query: 416 LHAN*TRSPIT 384
            + N +   +T
Sbjct: 600 QYPNNSTCSLT 610


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = -1

Query: 537 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 358
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 357 AAVLKRKAVLELR------RRKNLKALADAEKSGLK 268
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 492 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 337
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 492 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 337
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -1

Query: 612  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 433
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 432  KRVI 421
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -1

Query: 612  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 433
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 432  KRVI 421
            K  +
Sbjct: 2849 KEFV 2852


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 492 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 337
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,676,583
Number of Sequences: 27780
Number of extensions: 233522
Number of successful extensions: 723
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)