Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_I07
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0447 + 20878444-20878821 30 2.2
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 29 3.8
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 3.8
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 29 3.8
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 5.0
11_06_0610 - 25449085-25453284 28 6.6
05_06_0281 + 26912419-26913099 28 6.6
02_01_0289 - 1937125-1937385,1937570-1937611 28 6.6
08_01_1025 + 10361064-10361237,10361807-10361877,10362001-103622... 28 8.8
>06_03_0447 + 20878444-20878821
Length = 125
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 224 LPRSTLQPD-GAAHPKDAQPTEPSRRIEGSKTSAVSVRQPVGPPXRCR 364
LP +TL PD G A R G+K +A S+ P PP R R
Sbjct: 71 LPLTTLPPDSGGGEGVPASYRRSCRASAGAKATATSILAPQTPPLRHR 118
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 149 LNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPS 292
+ND A H D + G+ PD QP A P+D QP PS
Sbjct: 179 INDLDAGRH---DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPS 223
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 180 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 269
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +2
Query: 140 AHPLNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAA---HPKDAQPTEPSRRIEGS 310
A P + S L PT+ L P G LPRS A HP+DA P+ PS R +G
Sbjct: 26 ASPEDGSPFLRLPTASDL----PVPAGQLPRSAAVGLIRALNLHPRDASPS-PSSRGDGD 80
Query: 311 KTSAVSVRQPV 343
+ V +P+
Sbjct: 81 VPAGTLVERPI 91
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 178 DVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 297
D + P EP + +A T RR GSP PA A +A
Sbjct: 135 DAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Frame = +2
Query: 179 TSDPLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQPVGPPX 355
T P + P+E P S + P AHP P+E S ++S + + PP
Sbjct: 767 TPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPS 826
Query: 356 RCRWCPGIPAGXKXTCRVRTQYTSTGRSNHSRXPP 460
P P+ K + + S+ S PP
Sbjct: 827 GHEGTP--PSPVKSSSPPPEAHVSSPPPEKSSSPP 859
>05_06_0281 + 26912419-26913099
Length = 226
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 242 QPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQPVGPPXRCRWCPGIP 382
+P G P + P P+ + +R+P GP W PG+P
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP 128
>02_01_0289 - 1937125-1937385,1937570-1937611
Length = 100
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 145 PTKRLLCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPA 279
PT LC + PD SP R P G G + RR G G A
Sbjct: 36 PTSGSLCAMLPDSCSPHR--PQLGVGCRQIGVRRRRTGGMNGSGA 78
>08_01_1025 +
10361064-10361237,10361807-10361877,10362001-10362235,
10362317-10362520
Length = 227
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +2
Query: 137 RAHPLNDSSALLHPTSDP---LRG-QNPDEVGGLPRSTLQPDGAAHPKDAQ 277
RA P+ D + P+S+ L G Q P VG + R ++ D AA P DA+
Sbjct: 147 RASPVIDLNEACEPSSEEMEELHGYQEPVRVGRVMRYPMEGDFAAGPSDAK 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,748,396
Number of Sequences: 37544
Number of extensions: 407860
Number of successful extensions: 1109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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