Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I05
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    35   0.099
03_02_0730 + 10784784-10785341                                         30   2.1  

>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 457 PPGAXRASAXRVXXRAXXXGGVXGGVXXXGGARVSRQRCRR-APPPPL 317
           P  A  AS  R+  R    G   G +   G A   R RCRR  PPPPL
Sbjct: 179 PASAAAASHPRLRCRCEPRGCSSGRIEGAGAASDRRLRCRRLGPPPPL 226


>03_02_0730 + 10784784-10785341
          Length = 185

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = -2

Query: 447 RXGQAXXGXXXXQXXXAVCXAAXXXXAALVCRGSXAAARHPRRSGASSPTSLILVTS 277
           R G A  G        A    A    AA+ C G  AAA  PRR   + P+ L  V S
Sbjct: 101 RLGVASTGARRRLGAAATGARAQLGVAAIRCEGGEAAAPQPRRMDLAGPSLLCPVPS 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,664,872
Number of Sequences: 37544
Number of extensions: 187478
Number of successful extensions: 718
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)