Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_I04
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 146 2e-36
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 146 2e-36
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.8
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 27 4.1
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 26 5.5
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.2
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 9.6
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 146 bits (355), Expect = 2e-36
Identities = 93/223 (41%), Positives = 122/223 (54%), Gaps = 1/223 (0%)
Frame = -3
Query: 783 KKAHIMESNLTXYHXGQSEMXQRTXGRNXSPVDSVFAPR*ND*LHWCH-PRXKGYKGVTF 607
KKAH+ME + R + S F N+ + R KG +G T
Sbjct: 174 KKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQ--NEMIDVIGVTRGKGNEGTTA 231
Query: 606 RWHTKKLPPVRHTRXLGKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIH 427
RW TK+LP H R L K+ + G ++ + R + T+ L+ I+
Sbjct: 232 RWGTKRLPRKTH-RGLRKVACI--GAWHPA-NVQWTVARAGNAGYMHRTQ----LNSKIY 283
Query: 426 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 247
+ NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 284 RIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLL 343
Query: 246 VHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 118
HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 344 THTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 86.2 bits (204), Expect = 5e-18
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = -2
Query: 583 PRKTHKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 422
PRKTH+ LRKVACIGAWHP V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 146 bits (355), Expect = 2e-36
Identities = 93/223 (41%), Positives = 122/223 (54%), Gaps = 1/223 (0%)
Frame = -3
Query: 783 KKAHIMESNLTXYHXGQSEMXQRTXGRNXSPVDSVFAPR*ND*LHWCH-PRXKGYKGVTF 607
KKAH+ME + R + S F N+ + R KG +G T
Sbjct: 174 KKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQ--NEMIDVIGVTRGKGNEGTTA 231
Query: 606 RWHTKKLPPVRHTRXLGKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIH 427
RW TK+LP H R L K+ + G ++ + R + T+ L+ I+
Sbjct: 232 RWGTKRLPRKTH-RGLRKVACI--GAWHPA-NVQWTVARAGNAGYMHRTQ----LNSKIY 283
Query: 426 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 247
+ NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 284 RIGAGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLL 343
Query: 246 VHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 118
HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 344 THTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 86.2 bits (204), Expect = 5e-18
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = -2
Query: 583 PRKTHKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 422
PRKTH+ LRKVACIGAWHP V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 503 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 357
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 139 HGYTQEGSYSRRSCGYHNPS 80
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 395 ALFLITLPSFLWIPWSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPSSNAGNFPKXLVC 574
++ + + +F W W ++ F H I L + + R PSS A + P L C
Sbjct: 70 SMMSVAIVAFQWFFWGYSLTFS-HEGGPYIGSLAN--FGLRQTLGRPSSGASSVPDILFC 126
Query: 575 LTGGSF 592
+ G F
Sbjct: 127 VFQGMF 132
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 588 ASLCANEK*HLCILXPLGDTN-AVNHFI 668
A+ C N HL P DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 386 SVDALFLITLPSFLWIPW 439
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 413 LPSFLWIPWSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPSSNAGNFPKXLVCLTGGSF 592
L SFL + W N+I++ ++ + ++S S HP SS + K +G S
Sbjct: 313 LVSFL-VCWKNSINYRYMIISLDFSDISSPSVMNIHPLYSFSSKSLESSKLHYSSSGNSL 371
Query: 593 FV 598
FV
Sbjct: 372 FV 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,129
Number of Sequences: 5004
Number of extensions: 67259
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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