Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_I04
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   149   3e-36
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   141   5e-34
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   3.3  
04_03_0933 + 20906482-20906660,20907770-20907832,20910028-209101...    29   4.4  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  149 bits (360), Expect = 3e-36
 Identities = 96/225 (42%), Positives = 121/225 (53%), Gaps = 5/225 (2%)
 Frame = -3

Query: 783 KKAHIMESNLTXYHXGQSEMXQRTXGRNXSPVDSVFAPR*ND*LHWCHPRXKGYKGVTFR 604
           KKAH+ME  +                    PVD+VF       +     + KGY+GV  R
Sbjct: 177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGV-TKGKGYEGVVTR 235

Query: 603 WHTKKLPPVRHTRXLGKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 424
           W   +LP   H R L K+  +  G     R         V  TV +  +        ++K
Sbjct: 236 WGVTRLPRKTH-RGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNK 283

Query: 423 KDGKVIKNN-----ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 259
           K  K+ K+      A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR
Sbjct: 284 KVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 343

Query: 258 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 124
           +SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388



 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 41/48 (85%), Positives = 45/48 (93%)
 Frame = -2

Query: 583 PRKTHKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIG 440
           PRKTH+ LRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  141 bits (342), Expect = 5e-34
 Identities = 92/217 (42%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
 Frame = -3

Query: 783 KKAHIMESNLTXYHXGQSEMXQRTXGRNXSPVDSVFAPR*ND*LHWCHPRXKGYKGVTFR 604
           KKAH+ME  +                    PVD+VF       +     + KGY+GV  R
Sbjct: 177 KKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGV-TKGKGYEGVVTR 235

Query: 603 WHTKKLPPVRHTRXLGKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHK 424
           W   +LP   H R L K+  +  G     R         V  TV +  +        ++K
Sbjct: 236 WGVTRLPRKTH-RGLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNK 283

Query: 423 KDGKVIKNN-----ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLR 259
           K  K+ K+      A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+GPKKR++TLR
Sbjct: 284 KVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLR 343

Query: 258 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 148
           +SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 344 QSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380



 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 41/48 (85%), Positives = 45/48 (93%)
 Frame = -2

Query: 583 PRKTHKXLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIG 440
           PRKTH+ LRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 381  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 286
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>04_03_0933 +
           20906482-20906660,20907770-20907832,20910028-20910144,
           20910433-20910688,20910788-20910946,20911052-20911203,
           20911310-20911454
          Length = 356

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 488 FLTSTSYSERHPXRMPSSNAGNFPKXLVCLTGGSFFVCQRKVTPLYP 628
           F   T   + HP    +   G+F   + C T  ++ V Q KV+ +YP
Sbjct: 167 FAHLTENPQSHPISTGNQIIGSFLGIISCFTYATWLVIQAKVSKVYP 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,407,343
Number of Sequences: 37544
Number of extensions: 451657
Number of successful extensions: 1053
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)