Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_H16
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.39 
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    29   3.6  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.6  
07_03_0846 - 21983581-21986055                                         29   4.7  
06_01_0914 - 7047865-7049223                                           29   4.7  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   6.3  
01_06_0695 - 31292622-31293317                                         28   8.3  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 75  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/85 (27%), Positives = 29/85 (34%)
 Frame = +3

Query: 48  NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPDGLR 227
           +RS+  A       R   +S  D   P HR    P  R R     K  D    R PD   
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560

Query: 228 RRVSRFECETRLVKSHCLEPPDSRG 302
           ++ S      R   S    P  S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 430 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 332
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 201 DLRDPDGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 350
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>06_01_0914 - 7047865-7049223
          Length = 452

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 657 G*WLWQPSVHSDVAFDPSMSALPIIAKQNSPSVGLFTHQKGT*AGIRPS*DRLV 496
           G W W P+V+ D A    +    +   +N+  +GLF   + T   +R + +RLV
Sbjct: 260 GHWFWIPTVYHDAATGEVVGMHNVTGLKNTGDIGLFAPYRRT---LRMALERLV 310


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -3

Query: 490 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 326
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 325 GKDMLTVEPRESGGSK 278
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 27  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,843,876
Number of Sequences: 37544
Number of extensions: 438464
Number of successful extensions: 1209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)