Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_H11
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.024
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.29 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   4.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPPP 577
           PPPPPP   G G  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPPP 577
           PPPPPP     G  PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPPP 577
           PPPPPP G      PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPPP 577
           PPPPPP        PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 631 PPXPPPPXGGXGXXXPPP 578
           PP PPPP G      PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPPPXXKKKNP 556
           PPPPPP     G  P PP  +   P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPP 362



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPP 580
           PPPPP      G  PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = -2

Query: 630  PPPP--PPXGXGXGXXPPPPXXKKKNP 556
            PPPP  PP   G    PPPP      P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 557 GFFFFXXGGGGXXPXPXPXGGGGG 628
           GF  F  G GG  P P   GG GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGG 212



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 566 FFXXGGGGXXPXPXPXGGGGGG 631
           F   GGG   P P P G GG G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFG 211


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 624 PPPPXGXGXGXXPP 583
           PPPP G G G  PP
Sbjct: 129 PPPPAGFGRGAPPP 142


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 630 PPPPPPXGXGXGXXPPPP 577
           PPPPPP        P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,326,770
Number of Sequences: 5004
Number of extensions: 15103
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)