Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_H09
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 131 1e-31
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 4.2
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 4.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.6
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 5.6
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.7
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.7
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.7
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.7
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.7
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 131 bits (317), Expect = 1e-31
Identities = 77/201 (38%), Positives = 98/201 (48%)
Frame = -2
Query: 726 IAPLSVVIPAHNTGLGPEKTXXXXXXXXXXXFQRVLLKSSTMYTS*SPVTKVGASEATLL 547
IAPL V +PA NTG+ P KT R ++ ++ S KVG SEATLL
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLL 173
Query: 546 NMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIA 367
NMLNISPF+YG+ V +YD G +F+PEILD+ EDL + + + A+SL YPTI
Sbjct: 174 NMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTIL 233
Query: 366 SAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXX 187
S HS+ N +KNL+ K F+ DPS F
Sbjct: 234 SVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPA 291
Query: 186 XXXXXXXXXXSDDDMGFGLFD 124
SD+DMGFGLFD
Sbjct: 292 AEAAAEEEEESDEDMGFGLFD 312
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 262 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTE 441
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 442 IFWFDVQNF 468
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 259 VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGT 438
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 439 EI 444
E+
Sbjct: 1076 EL 1077
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 283 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSS 423
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 624 VLLKSSTMYTS*SPVTKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPE 445
VL K + S P + G+ L +SPFS + + +YD T P L+I +
Sbjct: 8 VLAKEESENGSPIPALEEGSVYHVSLKSEGVSPFSDRIQLNYLYDGKTFSDPSNLNIHQQ 67
Query: 444 D 442
+
Sbjct: 68 E 68
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 710 SSFPPTTPASVQRRPFFPGSFYPYQDF 630
S FP ++ +++P FP ++PY F
Sbjct: 439 SCFPKKHDSTSRKKPKFPYQYFPYMKF 465
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 467 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLVTGLQDV 598
S +V +S TCL + NGE+ + ++S + T T +Q++
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQEL 247
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 153 DDDMGFGLFD 124
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,188
Number of Sequences: 5004
Number of extensions: 50137
Number of successful extensions: 114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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