Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_H08
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 30 2.4
07_03_0846 - 21983581-21986055 29 3.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.2
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 4.2
03_05_0183 - 21681673-21682524 29 4.2
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.5
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 29 5.5
02_02_0240 + 8196140-8198248,8198381-8198650 29 5.5
01_06_0695 - 31292622-31293317 28 7.3
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 9.7
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.7
07_03_0626 + 20060013-20060273,20061017-20061274 28 9.7
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 343 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 209
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 678 RKVTTRDNWACGSQAFIATLLFDPSMS 598
+K+ + D+W C S + TL FDP+ S
Sbjct: 353 QKIDSADSWPCRSGSIFKTLRFDPATS 379
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 201 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 350
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 430 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 332
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 367 IIPRTVASHHRPLGRVHEPNVRNCGSSRT 453
++P T A+H LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 642 SQAFIATLLFDPSMSALPIIAKQNSPS 562
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -2
Query: 490 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 326
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 325 GKDMLTVEPRESGGSK 278
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 577 LRNDRKSRHRRIKKQRRYERLAATSPVIPGGNFSGP 684
L N+ +S+H K + RLAAT V GG + P
Sbjct: 922 LNNEAESKHGSQKLPQNASRLAATMDVTSGGKLNRP 957
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 373 PRTVASHHRPLGRVHEP 423
P TVA+H RPLG +H P
Sbjct: 36 PPTVATHTRPLGIIHPP 52
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 27 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 598 RHRRIKKQRRYERLAATSPVIPGGN 672
R R+ +++RR ER SP +P GN
Sbjct: 372 RTRKWEEERRQERREGKSPAVPSGN 396
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 200
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 201 D 203
+
Sbjct: 791 E 791
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 331 RLGWLRP*RRSGIIPRTVASHHRP 402
RLGWLRP R S ++P + + P
Sbjct: 32 RLGWLRPSRLSAVVPASESGRVGP 55
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 352 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 179
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 178 TRASR 164
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,997,320
Number of Sequences: 37544
Number of extensions: 484816
Number of successful extensions: 1446
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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