Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_H05
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 240 2e-64
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 146 2e-36
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 139 4e-34
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 119 6e-28
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 118 1e-27
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 98 1e-21
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 32 0.083
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.5
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.6
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 9.6
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 240 bits (587), Expect = 2e-64
Identities = 108/184 (58%), Positives = 141/184 (76%), Gaps = 1/184 (0%)
Frame = -1
Query: 676 SITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
S+TA+LSVP FVRPN ARK ADE + +F H DGDHLTLLNVYHA+K WC+++F
Sbjct: 526 SLTALLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNHF 585
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG 317
+++R+L S DNVR+QL R M+R ++ ST F K+YY+NIR+ALV+GFFMQVA G
Sbjct: 586 LSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANG 645
Query: 316 -SYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVFTTKNYIRTVTDIKPEWLLKIAPQYYE 140
+Y+T+KDNQVV LHPS L P+WV+YNEFV TTK++IR VT I+PEWL+++AP YY+
Sbjct: 646 KNYVTMKDNQVVSLHPSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYD 705
Query: 139 LGNF 128
L +F
Sbjct: 706 LDDF 709
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = -3
Query: 779 LTDLGAVMAEFPLDPQLAKMXIASCNHNCSNEIL 678
LT LG +EFPLDP LA M I S CSNE+L
Sbjct: 492 LTPLGRKASEFPLDPNLAVMLIRSPEFYCSNEVL 525
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 146 bits (355), Expect = 2e-36
Identities = 74/187 (39%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
Frame = -1
Query: 676 SITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
SI AMLSVP + RP E ++ AD + +FA+ + DHLTLLNVY +K N +WCY+++
Sbjct: 953 SIIAMLSVPNIWSRPREKQQEADRQRAQFANPESDHLTLLNVYTTWKMNRCSDNWCYEHY 1012
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE-RT 320
I R ++ ++VR+QL R+MDR+ S + I +AL +G+F VA +
Sbjct: 1013 IQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRE----LILRALCSGYFTNVAKRDSHE 1068
Query: 319 GSYLTVKDNQVVQLHPSTCLDHK-PDWVIYNEFVFTTKNYIRTVTDIKPEWLLKIAPQYY 143
G Y T+ +N V +HPS L K +WVIY+E + T+K Y+ TV+ + P+WL+++AP ++
Sbjct: 1069 GCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFF 1128
Query: 142 ELGNFPQ 122
+ N Q
Sbjct: 1129 KFANANQ 1135
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 779 LTDLGAVMAEFPLDPQLAKMXIASCNHNCSNEIL 678
LT LG MA+FP++PQL+K+ I S CS E+L
Sbjct: 919 LTPLGRKMADFPMEPQLSKVLITSVELGCSEEML 952
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 139 bits (337), Expect = 4e-34
Identities = 73/188 (38%), Positives = 111/188 (59%), Gaps = 3/188 (1%)
Frame = -1
Query: 676 SITAMLS-VPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDN 500
SI +ML F RP + AD+A+ F GDHLTLL++++ + +W +N
Sbjct: 861 SIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWAREN 920
Query: 499 FINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERT 320
F+ Y+SL +VR QL+ + +R ++ + S D I+KA+ G+F A L+R+
Sbjct: 921 FLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLD---PIKKAITAGYFSNAARLDRS 977
Query: 319 G-SYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVFTTKNYIRTVTDIKPEWLLKIAPQY 146
G SY TVK NQ V +HPS+ + + KP +IY E V TTK Y R +T+I+PEWLL+I+P Y
Sbjct: 978 GDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHY 1037
Query: 145 YELGNFPQ 122
++ N +
Sbjct: 1038 FKPENIEE 1045
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3
Query: 779 LTDLGAVMAEFPLDPQLAKMXIASCNHNCSNEIL 678
LT LG MAEFP DP L+K IAS + C E+L
Sbjct: 827 LTKLGRQMAEFPTDPMLSKSLIASSKYGCVEEVL 860
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 119 bits (286), Expect = 6e-28
Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 3/183 (1%)
Frame = -1
Query: 676 SITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNF 497
+I +MLSVP F RP E + +D A+ +F + DHL LLN+Y +++N WC +F
Sbjct: 933 TIVSMLSVPSVFYRPKERAEESDAAREKFNVPESDHLMLLNIYQHWQRNGYSNSWCSKHF 992
Query: 496 INYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTG 317
++ ++LK ++RQQL IM + ++ S E S D+ I +R+ L + +F Q A + G
Sbjct: 993 LHSKTLKRARDIRQQLVEIMSK---QKISLESVS-DWDI-VRRVLCSAYFHQAACAKGIG 1047
Query: 316 SYLTVKDNQVVQLHPSTC---LDHKPDWVIYNEFVFTTKNYIRTVTDIKPEWLLKIAPQY 146
Y+ ++ LH ++ L + PD+VIY+E V T+K Y+ VT + P WL + Y
Sbjct: 1048 EYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVY 1107
Query: 145 YEL 137
Y +
Sbjct: 1108 YSV 1110
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = -3
Query: 779 LTDLGAVMAEFPLDPQLAKMXIASCNHNCSNEIL 678
LT LG M+ FP+DP L+K+ I + ++ C+ EI+
Sbjct: 899 LTTLGKKMSLFPMDPSLSKLIIIAEDYKCTEEII 932
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 118 bits (284), Expect = 1e-27
Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 5/181 (2%)
Frame = -1
Query: 673 ITAMLSVPQCFVRPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPH--WCYDN 500
+ + LS F+ P E R A EA+++F H +GD LT LN + ++ D WC N
Sbjct: 538 VVSCLSTDSMFLFPQEKRDEAIEARLKFLHSEGDLLTCLNALRQYLESSHDSRKQWCSQN 597
Query: 499 FINYRSLKSGDNVRQQLSR--IMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLE 326
FIN R+LK+ ++R+QL + D + L +S E S+ N+ + ++G+ A L
Sbjct: 598 FINRRALKTILDIRKQLREHCLKDGWELN-SSPEVNSE----NLLLSFLSGYITNTALLH 652
Query: 325 RTGSYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVFTTKNYIRTVTDIKPEWLLKIAPQ 149
GSY T+ NQ + +HPS+ L K + ++Y+E VFTTK+Y+R V+ I+ WL +AP
Sbjct: 653 PDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPH 712
Query: 148 Y 146
Y
Sbjct: 713 Y 713
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 782 YLTDLGAVMAEFPLDPQLAKMXIASCNHNCSNEIL 678
++ DLG M+ PL P LA+ +A+ HNC +E++
Sbjct: 502 HINDLGYQMSLIPLLPSLARAVLAAREHNCLSEVI 536
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 97.9 bits (233), Expect = 1e-21
Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 2/174 (1%)
Frame = -1
Query: 676 SITAMLSVPQCFVRPNEARKA-ADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDN 500
SI ++L+ + F P + K A A F +GD +T LNV+ +F N +D WC N
Sbjct: 470 SIASILTAGEVFYNPTSSSKNDAFVAHSSFFANEGDIITALNVFESFVGNKKDLQWCRKN 529
Query: 499 FINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERT 320
++NY++L+ ++R L R +++F++ T+ S D I K L++GF VAHL+
Sbjct: 530 YLNYQTLRQALDIRTHLVRFLNKFSIP-TAQRLPSSD-CSKILKCLLDGFVRNVAHLQND 587
Query: 319 GSYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVFT-TKNYIRTVTDIKPEWLLK 161
GSY T+ QV S + K W++Y+ V + T+ +++ ++ I+ WL K
Sbjct: 588 GSYKTIGGKQVWLDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDK 641
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 32.3 bits (70), Expect = 0.083
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 779 LTDLGAVMAEFPLDPQLAKMXIASCNHNC 693
LT LG M+ FPL P+ +KM I H C
Sbjct: 868 LTKLGEQMSLFPLSPRFSKMLIIGQQHGC 896
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 506 IAPVGILHVLFEGVVYVQQREMVTVDVGKTHFSLVGS 616
I P GI H+L EG+ Y Q E+ +D+ F+ +GS
Sbjct: 199 IRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFTHLGS 233
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 400 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 278
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 547 HAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFN 425
HA ++ E +F YRSL G V++ SR+ R N
Sbjct: 2057 HALQEERERVKSLETDFDKYRSLLEGQRVKRSESRLSMRSN 2097
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 582 STVTISRC*TYTTPSNRTWRIPTGAMITSSITDR*SQATTSGSNLAGLW 436
STV S + P + + P SS T S +TTSGS+ + W
Sbjct: 218 STVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGSSDW 266
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 475 SGDNVRQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 308
S ++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 29 SSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,222
Number of Sequences: 5004
Number of extensions: 57177
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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