Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_G22
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 267 1e-72
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 2.2
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 2.2
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 2.2
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.9
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 5.1
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.8
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 267 bits (654), Expect = 1e-72
Identities = 127/171 (74%), Positives = 144/171 (84%)
Frame = -1
Query: 766 KXKFVGDGFFKAELNEFLXRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 587
K KFV DG F AELNEF REL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIR
Sbjct: 10 KRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIR 69
Query: 586 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 407
ELT++VQKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++M
Sbjct: 70 ELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVM 129
Query: 406 ESGARGCEVVVSGKLRGQRAKSMEFVDGLMIHSGDPCNDYVNTATRHVLLR 254
E+GA+GCEVV+SGKLR RAKSM+F DG MIHSG P D++++ATRHVLLR
Sbjct: 130 EAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLR 180
Score = 42.3 bits (95), Expect = 7e-05
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = -2
Query: 252 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 121
QGVLG+KVKIMLP + K KK PD ++V +PK+E +P
Sbjct: 181 QGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 518 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 414
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 518 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 414
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 518 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 414
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 261 FSEQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 103
F E VLG +KI W K+ P+K + I + P+ L P+SE ++
Sbjct: 56 FDESIVLGYSIKISPVWTYNLKDVPEK-ETMSIWIVTPQRRYGILSPSSEYKA 107
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 637 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 461
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 460 IG 455
+G
Sbjct: 784 LG 785
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 421 LRFIMESGARGCEVVVSGKLRGQRAKSMEFVDGLMIHSGDPCNDYVNTATRH 266
+ F ME + + ++ +L+ S + D ++I GD ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 6.8
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Frame = -2
Query: 399 VPVVVKLLYLASCVVNVPNQWSL*MDS*STLETLAMITSTLLPDMCFSEQGVLGIKVKIM 220
+P+ LL C V+ Q+SL + LET+ + P S +L +KV +
Sbjct: 266 IPISTSLLSKPICDVSFDGQFSLYIAHQLILETIVVEVMNSHP--INSNARILRMKVNLP 323
Query: 219 LP--------WDQQ-----GKNGPKKPQPDHILVTEPKDEPVP 130
L WD++ GP P + + + P D P+P
Sbjct: 324 LTERGGLGVSWDEECPPMFNSVGPSPPAYEQVARSSPTDIPLP 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,979
Number of Sequences: 5004
Number of extensions: 59243
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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