Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G20
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.6  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    25   9.6  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 384 EPDAAVSPVTFKLWKDSFKESLIKDELLEAV 476
           EP+  + P++ +L + +F+ S  +DE+L  +
Sbjct: 834 EPNEQIPPISARLRRRAFEFSTFQDEVLSVI 864


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 245 PGQTTPSAVPRERREVSLRQFGSL 316
           P Q +PSA P+  +  S ++FG+L
Sbjct: 14  PTQPSPSASPKSNKPSSAQRFGNL 37


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 233 SIVAPGQTTPSAVPRERREVSLRQFGSLLNPLRIVGTRHA 352
           S + PG   PS+   + R +S+  F  L  PL     +H+
Sbjct: 481 SPMKPGLRMPSSFDLQSRSISMGAFEQLSTPLEAPAHKHS 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,807
Number of Sequences: 5004
Number of extensions: 42402
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)