Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G20
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.47 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.8  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   7.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   7.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 230 TSIVAPGQTTPSAVPRERREVSLRQFGSLLNPLRIVGTRHAQR 358
           +S+V   Q TP+    ERR  S  Q+G L+        RH  R
Sbjct: 487 SSLVVQEQPTPTTESEERRFFSFHQWGILVYEPSACRPRHEIR 529


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 237 IEVRLHIAQPQDTSRREPYPILPL 166
           ++V + + +P D +  EP+P L L
Sbjct: 300 VQVYIQLKRPSDGATSEPFPFLML 323


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 237 IEVRLHIAQPQDTSRREPYPILPL 166
           ++V + + +P D +  EP+P L L
Sbjct: 300 VQVYIQLKRPSDGATSEPFPFLML 323


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 63  SNNFDNVKIHINYVISTGIYQVIRVLCSFFRP 158
           +NN+  +  +INY+    I   + + C  F P
Sbjct: 320 NNNYKKLYYNINYIEQIPIPVPVPIYCGNFPP 351


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = +3

Query: 63  SNNFDNVKIHINYVISTGIYQVIRVLCSFFRPSGIVAELGM 185
           +NN+  +  +INY+    +   + + C  F P  +   + M
Sbjct: 345 NNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEPWISM 385


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 370 RVHKPLRMPRTDYS 329
           R HKP R PRT ++
Sbjct: 4   RKHKPNRKPRTPFT 17


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 66  NNFDNVKIHINYVISTGIYQVIRVLCSFFRP 158
           NN+  +  +INY+    I   + + C  F P
Sbjct: 104 NNYKKLYYNINYIEQIPIPVPVPIYCGNFPP 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,157
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)