Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_G19
(807 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 181 2e-44
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 171 2e-41
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 151 2e-35
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 133 6e-30
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 132 8e-30
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 122 8e-27
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 4e-24
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 82 2e-14
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 64 4e-09
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 5e-08
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 58 3e-07
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 57 5e-07
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 56 8e-07
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 56 1e-06
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 51 3e-05
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 50 7e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 49 1e-04
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 47 5e-04
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 46 0.001
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 45 0.002
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 44 0.003
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 44 0.006
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 44 0.006
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 39 0.13
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 38 0.39
UniRef50_Q2IJD0 Cluster: 50S ribosomal protein L3; n=2; Anaeromy... 37 0.52
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.6
UniRef50_Q08TH3 Cluster: 50S ribosomal protein L3; n=2; Cystobac... 35 2.1
UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=... 35 2.8
UniRef50_UPI000051A196 Cluster: PREDICTED: similar to Toll-6 CG7... 34 3.7
UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32; Bacteri... 34 3.7
UniRef50_Q67JU3 Cluster: 50S ribosomal protein L3; n=55; Firmicu... 34 4.8
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 8.5
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 8.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 181 bits (441), Expect = 2e-44
Identities = 85/119 (71%), Positives = 99/119 (83%)
Frame = -2
Query: 452 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 273
+K + QG KDGK+IKNNAST+YDLS+KSI P+GGF HYGEV NDFVM+KGC +G K
Sbjct: 282 KKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Query: 272 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
KR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 342 KRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
Score = 89.8 bits (213), Expect = 7e-17
Identities = 38/53 (71%), Positives = 42/53 (79%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
+WARE E +PV+ VF QDEMID IGVT KGYKGVT RWHTKK PRKTH+G
Sbjct: 195 DWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRG 247
Score = 88.2 bits (209), Expect = 2e-16
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = -1
Query: 576 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
P + + LRKVACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IG
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIG 288
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 171 bits (415), Expect = 2e-41
Identities = 78/118 (66%), Positives = 93/118 (78%)
Frame = -2
Query: 452 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 273
+K + +G H +DGK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM+KGC G K
Sbjct: 282 KKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTK 341
Query: 272 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 99
KR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 342 KRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
Score = 86.6 bits (205), Expect = 6e-16
Identities = 47/110 (42%), Positives = 61/110 (55%)
Frame = -1
Query: 750 IQXNGGTXEDKVNGPENXWRXLSLXILCLPKMK*LTALVSPXXKDTKVSLXVGTQRXYPV 571
IQ NGGT +KV + + + + + + K + P
Sbjct: 183 IQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNP 421
+ K LRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG R P
Sbjct: 243 KTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIG-RGP 291
Score = 75.4 bits (177), Expect = 2e-12
Identities = 32/52 (61%), Positives = 38/52 (73%)
Frame = -3
Query: 712 WAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
WA+ E +PV SVF+Q E+ID I VT +G KGVT RWHTKK PRKTH+G
Sbjct: 196 WAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKG 247
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 151 bits (367), Expect = 2e-35
Identities = 69/100 (69%), Positives = 83/100 (83%)
Frame = -2
Query: 398 KNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA 219
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A
Sbjct: 249 KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVA 308
Query: 218 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 99
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 309 HEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
Score = 86.6 bits (205), Expect = 6e-16
Identities = 38/48 (79%), Positives = 42/48 (87%)
Frame = -1
Query: 576 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
P + K LRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG
Sbjct: 193 PRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIG 240
Score = 61.3 bits (142), Expect = 3e-08
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = -3
Query: 670 VFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
V A +MID IGVT G+KGVT RWHTKK PRKTH+G
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKG 199
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 133 bits (321), Expect = 6e-30
Identities = 64/114 (56%), Positives = 83/114 (72%)
Frame = -2
Query: 452 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 273
+K + QG K+GK+IKNNAST+Y KSI+P+GG H G+V NDFVM+K C +G K
Sbjct: 230 KKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTK 286
Query: 272 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
KR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 287 KRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
Score = 53.6 bits (123), Expect = 6e-06
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQGS*ESCLH 536
+WA + E +PV+ +F + IG T K YKG++ W+TKK P KTHQ E+
Sbjct: 151 DWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI 209
Query: 535 W 533
W
Sbjct: 210 W 210
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 132 bits (320), Expect = 8e-30
Identities = 61/100 (61%), Positives = 74/100 (74%)
Frame = -2
Query: 395 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAAL 216
N A+T YDL+ K+ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 215 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
Score = 83.8 bits (198), Expect = 5e-15
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = -1
Query: 576 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
P + + LRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G
Sbjct: 295 PRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLG 342
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
E A+ E + +DSVF Q E D VT G+ GV RW PRKTH+G
Sbjct: 249 ELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRG 301
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 122 bits (295), Expect = 8e-27
Identities = 64/119 (53%), Positives = 80/119 (67%)
Frame = -2
Query: 452 RKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPK 273
+K + QG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+ +KGC + K
Sbjct: 260 KKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRTK 319
Query: 272 KRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 96
K +T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 320 KH-LTICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
Score = 63.3 bits (147), Expect = 7e-09
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = -1
Query: 597 VGTQRXYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
V QR P R + K+ C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IG
Sbjct: 214 VDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIG 266
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 4e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 410 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 231
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 230 KRAALEK 210
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -2
Query: 284 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 105
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 104 REE 96
+E
Sbjct: 148 AKE 150
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 81.8 bits (193), Expect = 2e-14
Identities = 38/78 (48%), Positives = 53/78 (67%)
Frame = -2
Query: 362 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 183
KS+ MGGF +G +NND+++IKG G KR I LRK+++ EKI LK++DTS
Sbjct: 288 KSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTS 347
Query: 182 SKFGHGRFQTPADKAAFM 129
SK GHGR+++ ADK + M
Sbjct: 348 SKRGHGRYESSADKFSKM 365
Score = 74.1 bits (174), Expect = 4e-12
Identities = 32/48 (66%), Positives = 39/48 (81%)
Frame = -1
Query: 576 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
P + + LRKVACIG W PSRV++T++RAGQKGYH RT NKKIY+IG
Sbjct: 223 PRKTHRGLRKVACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIG 270
Score = 50.4 bits (115), Expect = 5e-05
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = -3
Query: 685 IPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
I ++S+F ++++ID IG+T G KGV RW + PRKTH+G
Sbjct: 187 IYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRG 229
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 64.1 bits (149), Expect = 4e-09
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
+ +K RKV IG WHP+RV +TV AGQ G+HHRTE+NK++ IG K
Sbjct: 245 KDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLK 296
Score = 60.1 bits (139), Expect = 6e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = -2
Query: 368 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFID 189
+E ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++ + ++
Sbjct: 301 TEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVS 360
Query: 188 TSSK 177
SK
Sbjct: 361 VESK 364
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -2
Query: 365 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 186
E +TP GGF HYGEV N +++++G GP KR++ R +R HT + ++L ++ T
Sbjct: 296 ESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVST 352
Query: 185 SSKFG 171
SSK G
Sbjct: 353 SSKQG 357
Score = 43.2 bits (97), Expect = 0.008
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 436
+++K R++ +G + V T+ +AGQ GYH RTE+NK+I RI
Sbjct: 247 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRI 291
Score = 39.5 bits (88), Expect = 0.097
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRK 569
EWA E I +D V+ + +D +G+T KG++GV R+ K K
Sbjct: 199 EWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHK 247
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 58.0 bits (134), Expect = 3e-07
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = -2
Query: 356 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 177
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I T+SK
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYISTTSK 332
Query: 176 FG 171
G
Sbjct: 333 QG 334
Score = 49.2 bits (112), Expect = 1e-04
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = -1
Query: 552 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
R V IG W P V ++V GQ GYH RTE NK+I +IG
Sbjct: 230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
Score = 38.7 bits (86), Expect = 0.17
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 712 WAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTK 584
+A+E + + VF + E++D IGVT KG++G RW K
Sbjct: 175 YAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVK 217
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 57.2 bits (132), Expect = 5e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = -2
Query: 362 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTS 183
+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLSTQ 333
Query: 182 SKFG 171
SK G
Sbjct: 334 SKMG 337
Score = 50.4 bits (115), Expect = 5e-05
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = -1
Query: 597 VGTQRXYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR 427
+ TQ+ R K R V +G W+P R+ + V + GQ GYH RTE NK+I ++G +
Sbjct: 219 IATQKRKHARTGKK-RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDK 274
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/65 (41%), Positives = 39/65 (60%)
Frame = -2
Query: 365 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 186
E ITP GGF HYGEV N +++I+G GP KR+I R + R R +++ ++ T
Sbjct: 276 ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVST 332
Query: 185 SSKFG 171
+SK G
Sbjct: 333 ASKQG 337
Score = 42.3 bits (95), Expect = 0.014
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 436
+++K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 227 KNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI 271
Score = 34.7 bits (76), Expect = 2.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 721 QSEWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRK 569
Q +WA E + ++ VF ID IGVT G +GV R+ K K
Sbjct: 177 QLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHK 227
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -1
Query: 561 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG-PRNPQKGWQSY 400
K +RKV IG+ P R+ TV GQ GYH RTE NK I +IG P N + GW Y
Sbjct: 218 KGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWVRY 272
Score = 42.3 bits (95), Expect = 0.014
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = -2
Query: 344 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 177
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +++I S K
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320
Score = 38.3 bits (85), Expect = 0.23
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
E+A + ++ VF + + +D I VT KG++GV R+H + K+ +G
Sbjct: 167 EYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKG 219
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 51.2 bits (117), Expect = 3e-05
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = -1
Query: 552 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRN---PQKGWQSY 400
R++ +G W+PSRV TV + GQ GYH RTE+NK++ I + P G+ +Y
Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEPTPDGGFPNY 285
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/61 (34%), Positives = 40/61 (65%)
Frame = -2
Query: 353 TPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKF 174
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++ T+S
Sbjct: 277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASNQ 334
Query: 173 G 171
G
Sbjct: 335 G 335
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 50.0 bits (114), Expect = 7e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = -2
Query: 362 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 240
+ +TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 279 EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = -1
Query: 552 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
R + IG PSRV +TV AGQ GYH RTE NK+I +IG
Sbjct: 236 RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIG 275
Score = 37.5 bits (83), Expect = 0.39
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQ 560
E+A E I VF + E++D +T KG++GV RW RKT +
Sbjct: 180 EYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQR 231
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 407 KVIKNNASTEYDLSEKS--ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 234
+ I N +Y E + I GGF HYG V ND+V++ G GP KR+I +R R
Sbjct: 252 RTISNVRVLKYSKGEDADTINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR-- 309
Query: 233 TKRAALEKINLKFIDTSSKFG 171
K ++ + L +I SK G
Sbjct: 310 QKVPDIDNVKLDYISLESKQG 330
Score = 42.7 bits (96), Expect = 0.010
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -1
Query: 576 PVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYR 439
P ++ K R + +G WHP V TV +AGQ GY RT N ++ +
Sbjct: 216 PRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLK 261
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 47.2 bits (107), Expect = 5e-04
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = -2
Query: 368 SEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 240
S K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 270 SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
Score = 41.1 bits (92), Expect = 0.032
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR------NPQKGW 409
+H K ++ +G P+ + F GQ G+H RTE NK+I ++G NP GW
Sbjct: 222 KHRKGHSRIGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVGDAESLKEINPPGGW 280
Query: 408 QSY 400
Y
Sbjct: 281 PHY 283
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -1
Query: 561 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
K +R++ +G P V +TV RAGQ G+H R E NK+I +G
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVG 266
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = -2
Query: 365 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 207
+ +I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 271 DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -2
Query: 362 KSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 240
K I P GGF YG V N +V+++G +G KKR I LR+ +R
Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPVR 330
Score = 37.1 bits (82), Expect = 0.52
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -3
Query: 721 QSEWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPR--KTHQGS 554
Q ++A I + VF + ++ID +GVT KG+ GV R+ + PR K +GS
Sbjct: 191 QLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGS 248
Score = 35.9 bits (79), Expect = 1.2
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG--PR--NPQKGWQS 403
+H K RK+ G S+T + GQ G+H RTE NK+I +IG P+ NP G+
Sbjct: 243 KHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVR 300
Query: 402 Y 400
Y
Sbjct: 301 Y 301
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = -2
Query: 374 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 240
D + I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 271 DDDKLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
Score = 43.2 bits (97), Expect = 0.008
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -1
Query: 561 KXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
K +R+V +G P V +TV RAGQ G+H R E +K+I +G + K
Sbjct: 226 KTVREVGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMGNTDDDK 274
Score = 37.5 bits (83), Expect = 0.39
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 685 IPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQ 560
I +D +F +D +T KG++GV RW+ KK K+ +
Sbjct: 185 IKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRK 226
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 43.6 bits (98), Expect = 0.006
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -2
Query: 356 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 240
+TP GGF YG V ++M+ G +GP+KR++ LR +R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
Score = 42.3 bits (95), Expect = 0.014
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = -3
Query: 685 IPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPR--KTHQGS 554
+ VD VF + + ID IGVT KG++GV R+ K+ PR K +GS
Sbjct: 245 VTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGS 290
Score = 33.5 bits (73), Expect = 6.4
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIG 433
+H K RK IG+ P + + + GQ G+H RTE NK+I +IG
Sbjct: 285 KHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG 328
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPR--KTHQGS 554
++A++ I V+ VF + +++D I VT KG++GV RW K+ PR K +GS
Sbjct: 181 DYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGS 236
Score = 41.9 bits (94), Expect = 0.018
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 356 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDTS 183
+TP GGF YG V + FVM+ G G KR I +R ++R + + K + +I +
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339
Query: 182 SKFG 171
SK G
Sbjct: 340 SKQG 343
Score = 33.5 bits (73), Expect = 6.4
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRI 436
+H K R+ IGA R +F +AGQ G+H RTE NK+I I
Sbjct: 231 KHRKGSRR---IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMI 273
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 39.1 bits (87), Expect = 0.13
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 593 PTXSDTFVSFXXGDTNAVNHFILGKHRIXRDRXLXMFSGP 712
P+ DT + GD+N +NHFIL ++R+ R+ +F GP
Sbjct: 42 PSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGP 81
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 37.5 bits (83), Expect = 0.39
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -2
Query: 344 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 240
GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
Score = 36.3 bits (80), Expect = 0.91
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPR--KTHQGS 554
E+A+ + V+ V + +D IGVT KG++GV R+ K+ P+ K +GS
Sbjct: 198 EYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGS 253
Score = 35.9 bits (79), Expect = 1.2
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -1
Query: 570 RHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPR----NPQKGWQS 403
+H K R+V +W S+ V + GQ GYH RT+ NK++ I N + GW
Sbjct: 248 KHRKGSRRVGA-RSWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSKINVEGGWLH 305
Query: 402 Y 400
Y
Sbjct: 306 Y 306
>UniRef50_Q2IJD0 Cluster: 50S ribosomal protein L3; n=2;
Anaeromyxobacter|Rep: 50S ribosomal protein L3 -
Anaeromyxobacter dehalogenans (strain 2CP-C)
Length = 236
Score = 37.1 bits (82), Expect = 0.52
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 685 IPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPR 572
+ VD VF ++ ID GVT +G+ GV RW+ K R
Sbjct: 103 LTVDKVFKANQRIDVAGVTKGRGFTGVMKRWNMKGAAR 140
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.6
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 244 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 122
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q08TH3 Cluster: 50S ribosomal protein L3; n=2;
Cystobacterineae|Rep: 50S ribosomal protein L3 -
Stigmatella aurantiaca DW4/3-1
Length = 259
Score = 35.1 bits (77), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 670 VFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTH 563
+F + +++D G T +G+ GV RW K KTH
Sbjct: 138 LFTKGQLVDVTGTTKGRGFSGVMRRWSFKGSQTKTH 173
>UniRef50_Q8IKJ3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 93
Score = 35.1 bits (77), Expect = 2.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 3 FFFFFFALSNVYFHGLHLRLRSSRWGCGSRSFFA 104
FFFFFF + N YF+ L L ++ GCG FA
Sbjct: 19 FFFFFFVVYNDYFNEPELPLDENKKGCGQFKCFA 52
>UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=1;
Alteromonadales bacterium TW-7|Rep: Methyl-accepting
chemotaxis protein - Alteromonadales bacterium TW-7
Length = 676
Score = 34.7 bits (76), Expect = 2.8
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Frame = -2
Query: 455 TRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP 276
T+ + V D H++D + + +N + E+ TP+G + + F ++ GP
Sbjct: 204 TQTTSVSDLNDHQQDTQFLLDNIQPNFVYLEQQATPLGDNLNASQFTEQFNNLRSRLNGP 263
Query: 275 KKRIITLRKSLR-VHTKRAALEKINLKFIDTSS------KFGHGRFQTPADKA 138
K+L+ + + E+ +FIDT S K RFQT + A
Sbjct: 264 DGIYAQQNKALKNTQMAQQSFERFQQEFIDTESQLLQLNKLADERFQTLQNSA 316
>UniRef50_UPI000051A196 Cluster: PREDICTED: similar to Toll-6
CG7250-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Toll-6 CG7250-PA - Apis mellifera
Length = 1218
Score = 34.3 bits (75), Expect = 3.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 406 LPSFLWIPWSNTIDFLVHFSTVM-ITFLTSTSYSERHPRRMPSSNAGNFPKXLGV 567
+P L+ P SN + V ++ + IT L +ERHPRR S FP L V
Sbjct: 179 IPEHLFCPLSNLVTLNVSWNMLKDITELGFRDIAERHPRRQQESTTSPFPCSLDV 233
>UniRef50_Q890N9 Cluster: 50S ribosomal protein L3; n=32;
Bacteria|Rep: 50S ribosomal protein L3 - Clostridium
tetani
Length = 209
Score = 34.3 bits (75), Expect = 3.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 685 IPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXP 575
I VD +F E ID G + KGY+G+ RW+ + P
Sbjct: 97 IKVD-IFEAGEKIDVTGTSKGKGYQGIIKRWNAHRGP 132
>UniRef50_Q67JU3 Cluster: 50S ribosomal protein L3; n=55;
Firmicutes|Rep: 50S ribosomal protein L3 -
Symbiobacterium thermophilum
Length = 216
Score = 33.9 bits (74), Expect = 4.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 670 VFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXP 575
+FA+ E++D G++ KG+ G RW+ + P
Sbjct: 101 IFAEGELVDVTGISRGKGFAGGVKRWNFNRGP 132
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.1 bits (72), Expect = 8.5
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 255 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSL 431
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL 508
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 8.5
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -2
Query: 323 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 198
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,654,770
Number of Sequences: 1657284
Number of extensions: 15260597
Number of successful extensions: 34708
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 33643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34691
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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