Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G19
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   8.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 351 TDGRFPPLW 325
           T+GR PP+W
Sbjct: 216 TEGRLPPVW 224


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 795  SNEXLNSAKEGSHYGIQXNGGTXEDKVNGPENXWRXLSLXILC 667
            + E    AK+ S  G   +GGT +D     E     L   +LC
Sbjct: 1080 AEEAKRKAKQKSLLGFLQSGGTSDDDEGSIEISLAGLFKCMLC 1122


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 795  SNEXLNSAKEGSHYGIQXNGGTXEDKVNGPENXWRXLSLXILC 667
            + E    AK+ S  G   +GGT +D     E     L   +LC
Sbjct: 1080 AEEAKRKAKQKSLLGFLQSGGTSDDDEGSIEISLAGLFKCMLC 1122


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 795  SNEXLNSAKEGSHYGIQXNGGTXEDKVNGPENXWRXLSLXILC 667
            + E    AK+ S  G   +GGT +D     E     L   +LC
Sbjct: 1080 AEEAKRKAKQKSLLGFLQSGGTSDDDEGSIEISLAGLFKCMLC 1122


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 795  SNEXLNSAKEGSHYGIQXNGGTXEDKVNGPENXWRXLSLXILC 667
            + E    AK+ S  G   +GGT +D     E     L   +LC
Sbjct: 1080 AEEAKRKAKQKSLLGFLQSGGTSDDDEGSIEISLAGLFKCMLC 1122


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 126 YTQEGSYSRRSCGY 85
           Y Q  +Y   SCGY
Sbjct: 338 YDQSSAYDASSCGY 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,295
Number of Sequences: 336
Number of extensions: 3859
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)