Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G19
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   2.4  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   3.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.2  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 213
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 212 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = -1

Query: 750 IQXNGGTXEDKVNGPENXWRXLSLXILCLPKMK*LTALVSPXXKDTK-VSLXVGTQRXYP 574
           IQ NGG+  DKV      +           + + +  +     K  +  +   GT+R  P
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL-P 239

Query: 573 VRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
            +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 240 RKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = -3

Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
           EWAREH E  + + S F Q+EMID IGVT  KG +G T RW TK+ PRKTH+G
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 63/94 (67%), Positives = 75/94 (79%)
 Frame = -2

Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 213
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 212 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
            ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = -1

Query: 750 IQXNGGTXEDKVNGPENXWRXLSLXILCLPKMK*LTALVSPXXKDTK-VSLXVGTQRXYP 574
           IQ NGG+  DKV      +           + + +  +     K  +  +   GT+R  P
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL-P 239

Query: 573 VRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
            +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG  +  K
Sbjct: 240 RKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = -3

Query: 715 EWAREHXEXPIPVDSVFAQDEMIDCIGVTXXKGYKGVTXRWHTKKXPRKTHQG 557
           EWAREH E  + + S F Q+EMID IGVT  KG +G T RW TK+ PRKTH+G
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 667 FAQDEMIDCIGVTXXKGYKGVTXRW 593
           F   + +D  G+T  KG+ GV  RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 496 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 350
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 132 HGYTQEGSYSRRSCGYHNPS 73
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 472 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 332
           SP+    + L+Y   E  +   K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 379 SVDALFLITLPSFLWIPW 432
           +VDA+F I+  +FLW  W
Sbjct: 11  TVDAIFAISSSTFLWSTW 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,222
Number of Sequences: 5004
Number of extensions: 64583
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)