Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G12
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800...    32   0.49 
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.5  
12_01_0304 - 2299676-2299938,2300493-2300841                           29   6.0  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   6.0  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   6.0  
09_04_0007 - 13641012-13641431,13642220-13642312,13642429-136425...    28   7.9  
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724           28   7.9  

>04_01_0610 -
           7997406-7998047,7998379-7998426,8000719-8001143,
           8002301-8002589
          Length = 467

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -2

Query: 769 GXPPLXLXA*YWRXRPYASXHXPXXXRVHQPDHQIPRFHTP 647
           G PPL         RP+   H P     H P H  PR H P
Sbjct: 393 GPPPLAQAPPRHPPRPWCRPHTPRPRSPHSPTHPRPRLHHP 433


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 83  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 184
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>12_01_0304 - 2299676-2299938,2300493-2300841
          Length = 203

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +2

Query: 560 DNGGFNPGANSLLVRRQGIDGNGC*VWGGWCMESGDLMIGLMYPXSXG 703
           DNGG    A  L +   G+DG GC V  G    SG    G + P S G
Sbjct: 80  DNGGGGATARQLRLDGVGVDGAGCGVVSGRLDGSGG--AGTLGPDSTG 125


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 75  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 221
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 242  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 63
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 62   ILHSF 48
            +LHSF
Sbjct: 1408 LLHSF 1412


>09_04_0007 -
           13641012-13641431,13642220-13642312,13642429-13642521,
           13642607-13642671,13643495-13643565,13643644-13643682,
           13644709-13645121
          Length = 397

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -3

Query: 792 DVTVKESRGGHPXIFXHNIGGXALMHQXTXPXDXGYINPIIKSPDSIHQPPQT*HP 625
           DV ++E+ G    +F H+ GG  ++     P    ++  +I +  +IH  P   HP
Sbjct: 202 DVVLEENYGLPCFLFGHSTGGAIVLKAVLDPCVEVHVEGVILTSPAIHVQPS--HP 255


>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
          Length = 574

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = -3

Query: 708 TXPXDXGYINPIIKSPDSIHQ----PPQT*HPFPSIP*R--RTRREFAPGLKPPLSSEAP 547
           T P +  Y    ++  D+ HQ    PP      P  P +  +T  ++A   +PP +S  P
Sbjct: 314 TIPQESYYPPSAVQPTDTTHQQYQAPPAPQSQAPPAPPQHYQTPPQYAQYSQPPPASANP 373

Query: 546 SAYLTPSSLGMXKGVSPPY 490
           S  + PS     + V+ PY
Sbjct: 374 STAVPPSVHQQPEEVAAPY 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,469,717
Number of Sequences: 37544
Number of extensions: 432361
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)