Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_G10
(778 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.1
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 30 2.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.8
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.7
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 3.7
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 3.7
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 3.7
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.9
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.9
Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 8.6
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 28 8.6
AF098500-1|AAC67400.2| 311|Caenorhabditis elegans Hypothetical ... 28 8.6
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 8.6
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 8.6
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.6
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +3
Query: 120 PRNFRTHPLND-SPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTE-PSRR 293
P + P N+ SP + P+ +P P P QP G P P+E P
Sbjct: 77 PTSVVPQPSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPS 136
Query: 294 IEGSETSAVSVRQPVGPP 347
+E SE QP GPP
Sbjct: 137 VEPSED-----HQPSGPP 149
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 389 SGPAGYSGTPAAPSGRPDGLPYRDG 315
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 153 SPALLHPT--SDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSV 326
SP H + S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 43 SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSN 102
Query: 327 RQ-PVGPPRRCRWCPGIP 377
PV P G+P
Sbjct: 103 SSLPVRSPAIMTLMGGVP 120
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 389 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 309
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 410 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 410 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 410 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 150 DSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHP 260
D P + HP PL +P G +PR+ L P+GA P
Sbjct: 319 DEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 2.8
Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 13/170 (7%)
Frame = +2
Query: 155 PCTLTPDVRSPPRSEPG*GRGATAVNTT-----TRRRGSPQGRPADGAFEANRRL*NVGR 319
P T V S PG G T +T+ + GS QG + G + + + G
Sbjct: 872 PSQSTSPVESSTTPSPG-SPGTTLTSTSPSPSQSTTIGSTQGSTSPGISTTSEEMTSQGS 930
Query: 320 L------GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRS-NHSTXXXXXXXXXX 478
G+ + + S + + GS PST ++ N ST
Sbjct: 931 TQTPGSTGSTVTQPSTVSDSTSSGSTVTVGSTEGSSSPIPSTSQNTNPSTSSGSSMSTQT 990
Query: 479 XXLTPSGRPL-TFTGGEAATYRGPGRTGVFPPPAPGSTATDRCGKGXSSP 625
+ S P+ + T G ++ PG T P+P ++T +G +SP
Sbjct: 991 PQSSQSTSPVESSTSGATSSSGSPGTTLTSISPSPSPSSTIGSSQGSTSP 1040
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 389 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 309
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 389 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 303
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 425 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 315
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 386 GPAGYSGTPAAPSG-RPDGLPYRDG 315
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 386 GPAGYSGTPAAPSG-RPDGLPYRDG 315
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 386 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 294
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 386 GPAGYSGTPAAPSGRP--DGLPYRDGRR 309
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 386 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 288
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.9
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Frame = +2
Query: 146 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLG 325
+R P T +P SPP P G + ++ R P+G P G R+
Sbjct: 341 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSES 400
Query: 326 TAARRAAQTVPLVSRNTPLDQNQPAG-SGRDTPSTGRSNHSTXXXXXXXXXXXXLTPSGR 502
R + P +P + P G R +P TG + T P+G
Sbjct: 401 REEPRGPRRSP--PTGSPPTGSPPTGRPPRGSPPTG--SPPTGLPSRQKRQAPEDRPTGS 456
Query: 503 PLTFTGGEAATYR-GPGRT 556
P T + +R GPG++
Sbjct: 457 PPTGSPPTGRPHRGGPGKS 475
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 4.9
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Frame = +2
Query: 146 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLG 325
+R P T +P SPP P G + ++ R P+G P G R+
Sbjct: 362 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSES 421
Query: 326 TAARRAAQTVPLVSRNTPLDQNQPAG-SGRDTPSTGRSNHSTXXXXXXXXXXXXLTPSGR 502
R + P +P + P G R +P TG + T P+G
Sbjct: 422 REEPRGPRRSP--PTGSPPTGSPPTGRPPRGSPPTG--SPPTGLPSRQKRQAPEDRPTGS 477
Query: 503 PLTFTGGEAATYR-GPGRT 556
P T + +R GPG++
Sbjct: 478 PPTGSPPTGRPHRGGPGKS 496
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 4.9
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 2/139 (1%)
Frame = +2
Query: 146 KRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLG 325
+R P T +P SPP P G + ++ R P+G P G R+
Sbjct: 347 ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSES 406
Query: 326 TAARRAAQTVPLVSRNTPLDQNQPAG-SGRDTPSTGRSNHSTXXXXXXXXXXXXLTPSGR 502
R + P +P + P G R +P TG + T P+G
Sbjct: 407 REEPRGPRRSP--PTGSPPTGSPPTGRPPRGSPPTG--SPPTGLPSRQKRQAPEDRPTGS 462
Query: 503 PLTFTGGEAATYR-GPGRT 556
P T + +R GPG++
Sbjct: 463 PPTGSPPTGRPHRGGPGKS 481
>Z50177-1|CAA90543.2| 607|Caenorhabditis elegans Hypothetical
protein F46G10.2 protein.
Length = 607
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = +3
Query: 102 CEQTAGPRNFRTHPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTE 281
C+ N +TH + + L S G N G+P + AHP QP E
Sbjct: 546 CDSIDSRNNSKTHSTDSGVSSLSSNSSHSGGDNETLTSGMPTHLRDLNIEAHPLLRQPVE 605
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 407 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +3
Query: 171 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSETS 314
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 315 AVSVRQPVGPP 347
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 582 PGAGGGNTPVRPGPL*VAASPPVKVKGRP 496
PG GGG P P PP K +GRP
Sbjct: 631 PGGGGGGGPTGPP---APPKPPAKPRGRP 656
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +2
Query: 485 LTPSGRPLTFTGGEAATYRGPGRTGVFPPPAPGSTATDRCGKGXSSPSLAP 637
+T +G + T EA T G G G PPP P +TA G P AP
Sbjct: 142 ITTNGEEIMKT--EALTPTGGGGGGSVPPPPPAATAAVSMNGG--GPGSAP 188
>AF098500-1|AAC67400.2| 311|Caenorhabditis elegans Hypothetical
protein F43B10.1 protein.
Length = 311
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 NFRTHPLNDSPALLH-PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEG 302
+++T P + L H SDPLR + PR L D P+ T R +E
Sbjct: 149 SYKTRPFMEKLDLSHLGPSDPLRDSDLQPAITTPRKNLNFDLPRSPRIETTTSADRNVEL 208
Query: 303 SETSAVSVRQP 335
S+ P
Sbjct: 209 RRLRRKSIESP 219
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 612 PFPHRSVAVEPGAGGGNTPVRPGPL*VAASPPVKVKGRP 496
P P RS A+ GAGGG P P AA+P + P
Sbjct: 273 PCPPRSAAL--GAGGGAEPAGAAPEAAAAAPEAAPEAAP 309
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 582 PGAGGGNTPVRPGPL*VAASPPVKVKGRP 496
PG GGG P P PP K +GRP
Sbjct: 631 PGGGGGGGPTGPP---APPKPPAKPRGRP 656
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 407 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,176,062
Number of Sequences: 27780
Number of extensions: 359390
Number of successful extensions: 1734
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -