Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G09
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   254   9e-70
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   254   9e-70

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  254 bits (621), Expect = 9e-70
 Identities = 115/140 (82%), Positives = 128/140 (91%)
 Frame = -1

Query: 613 NCISKXFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPXVISWAIAQ 434
           NC++K FK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ
Sbjct: 161 NCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQ 220

Query: 433 TVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAXFKGAXSNV 254
            VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +A FKGA SN+
Sbjct: 221 VVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNI 280

Query: 253 LRGTGGAFVLVLYDEIKKVL 194
           LRGTGGA VLVLYDEIK +L
Sbjct: 281 LRGTGGALVLVLYDEIKNLL 300



 Score = 30.7 bits (66), Expect = 0.017
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
 Frame = -1

Query: 613 NCISKXFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNTPXVISWAI 440
           +C  +  K  G +  +RG   +V      +A  F F D  + +      KNT  +  +  
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVG 117

Query: 439 AQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAXFK 272
                  AG  S    YP D  R R+    G+A  +  +    +C   I K +G +  ++
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 271 G 269
           G
Sbjct: 178 G 178



 Score = 29.9 bits (64), Expect = 0.029
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 445 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAXFK 272
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  + ++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 271 GAXSNVLR 248
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  254 bits (621), Expect = 9e-70
 Identities = 115/140 (82%), Positives = 128/140 (91%)
 Frame = -1

Query: 613 NCISKXFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPXVISWAIAQ 434
           NC++K FK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +ISW IAQ
Sbjct: 161 NCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQ 220

Query: 433 TVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAXFKGAXSNV 254
            VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI KTEG +A FKGA SN+
Sbjct: 221 VVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNI 280

Query: 253 LRGTGGAFVLVLYDEIKKVL 194
           LRGTGGA VLVLYDEIK +L
Sbjct: 281 LRGTGGALVLVLYDEIKNLL 300



 Score = 30.7 bits (66), Expect = 0.017
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
 Frame = -1

Query: 613 NCISKXFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD--PKNTPXVISWAI 440
           +C  +  K  G +  +RG   +V      +A  F F D  + +      KNT  +  +  
Sbjct: 58  DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVG 117

Query: 439 AQTVTTVAGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAXFK 272
                  AG  S    YP D  R R+    G+A  +  +    +C   I K +G +  ++
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 271 G 269
           G
Sbjct: 178 G 178



 Score = 29.9 bits (64), Expect = 0.029
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 445 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAXFK 272
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  + ++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 271 GAXSNVLR 248
           G  +NV+R
Sbjct: 75  GNLANVIR 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,300
Number of Sequences: 438
Number of extensions: 3037
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)