Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G07
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    33   0.20 
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    31   0.82 
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.5  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   3.3  
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997...    29   4.4  
01_06_0695 - 31292622-31293317                                         28   7.7  

>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = +1

Query: 22  ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 201
           +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790

Query: 202 XNSSRPKXQKW 234
            N       KW
Sbjct: 791 ENMEATTGNKW 801


>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 76  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS 198
           PS TP  ER  S+D   PR     Y   R+RD    K+  S
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSS 405


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 564 KXPPPPXXXKKXXPPXXKKKXXXXXXXPPXXXGGRGXPPXKK 439
           K PPPP   K   PP   K        PP    G   PP  K
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 558  PPPPXXXKKXXPPXXKKKXXXXXXXPPXXXGGRGXPP 448
            PPPP   +   PP            PP   GG G PP
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199


>03_02_0631 +
           9969841-9969868,9969965-9970082,9970186-9970828,
           9971146-9971935,9972002-9972051,9972618-9972704
          Length = 571

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = -3

Query: 567 KKXPPPPXXXKKXXPPXXKKKXXXXXXXPPXXXGGRGXPP 448
           K  PPPP    K  PP  +K        PP     +  PP
Sbjct: 77  KVSPPPPQKPDKVSPPPAQKPSKVSPPPPPPQKSAKVSPP 116


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 28  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 162
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,690,660
Number of Sequences: 37544
Number of extensions: 235505
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)