Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G06
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   123   3e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   120   3e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.002
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.46 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   9.9  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  123 bits (297), Expect = 3e-29
 Identities = 58/88 (65%), Positives = 67/88 (76%)
 Frame = -2

Query: 619 RXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSIGLMWWLLA 440
           R ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLA
Sbjct: 122 RLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLA 181

Query: 439 REVLRLRGVLPRDQRWDVVVDLFFYRDP 356
           REVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 182 REVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/45 (55%), Positives = 29/45 (64%)
 Frame = -3

Query: 777 IXTPXNGXVIXSRPFGQRAVXNXPAHTGVTXIAGRFTPGAFTNQI 643
           I  P +  V+ +R +G RAV    AHTG T IAGRFTPG FTN I
Sbjct: 70  IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 114


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  120 bits (288), Expect = 3e-28
 Identities = 57/88 (64%), Positives = 66/88 (75%)
 Frame = -2

Query: 619 RXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSIGLMWWLLA 440
           R +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLA
Sbjct: 123 RLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLA 182

Query: 439 REVLRLRGVLPRDQRWDVVVDLFFYRDP 356
           REVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 183 REVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 28/45 (62%), Positives = 30/45 (66%)
 Frame = -3

Query: 777 IXTPXNGXVIXSRPFGQRAVXNXPAHTGVTXIAGRFTPGAFTNQI 643
           I  P +  VI SRP+G RAV    AHTG T IAGRFTPG FTN I
Sbjct: 71  IENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 115


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 613 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSIGLMWWLLAR 437
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 351 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 420 VVCFPVTSAGMLWLICSSTVTPEESEKD 337
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 574 TEASYVNIPVIALCNTDSPLRXVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  R  D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,298
Number of Sequences: 5004
Number of extensions: 51507
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)