Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G03
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    92   7e-20
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   4.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   9.6  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 49/158 (31%), Positives = 83/158 (52%)
 Frame = -3

Query: 574 RIGSVLXLGIAYAGTQTRRCAVPLASRAQRTRPPPAEICALAAISCGLIAVGSCNGDVSC 395
           R  ++L LG+AY+G   R   + + S        P ++  LAA+S GLI VG+CNGDV+ 
Sbjct: 477 RASAILGLGLAYSGAN-REDLLDMLSPIVTDTDCPMQLSCLAALSLGLIFVGTCNGDVAS 535

Query: 394 AIIQRLIDDNKDLHSSTYARXXXXXXXXXXXXCKERTEATMAALEVLPEPQQSLCQTTLS 215
            I+Q L++  +   +  + R             ++  +AT+  L+ +        +  + 
Sbjct: 536 TILQTLMEREESAQNDQWGRFMALGLALLFNGKQDLADATVETLKAIEGKIARQAEILVD 595

Query: 214 MCAYAGTGDVLVVQQMLHICSKHYETDNEQSSTEDTAF 101
           +C+YAGTG+VL +Q++LHICS+    D ++S T    F
Sbjct: 596 ICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTF 633


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 229 GRATAAAPEVLPTRPSSPPCAPCSLRNTARVPNAGT 336
           G      P+V  +RP  PP  P  + N   VP   T
Sbjct: 342 GNQVMPTPQVQGSRPPPPPPMPAPIYNVPNVPTVPT 377


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 229 GRATAAAPEVLPTRPSSPPCAPCSLRNTA 315
           G A+  +   +PT PS PP AP SL  +A
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLPPSA 435


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 144 TKPIMNNRQLKTQLLRNKTRRTQKKLQQLRAVQRTT 37
           T+P    + LKT L  +K  +++  L+ L A+Q TT
Sbjct: 57  TRPSFIRKVLKTCLDTSKPAKSRSLLETLNAIQETT 92


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 282 SVRSLQPKKHSPSPKCRNLA*VDECKSLLSSINR*MIAQDTSPLHDPTAMSPQ 440
           SV S  P   S  P  + LA ++ CK+ + + N+       SP      M PQ
Sbjct: 241 SVGSTPPSTPSVLPIAKQLAPMNVCKAHIQASNQSRTLTTASPPEQIPLMEPQ 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,043
Number of Sequences: 5004
Number of extensions: 47755
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)