Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_G03
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 341 RQVPAFGTRAVFLRLQGAHGGDDG 270
           RQ+P  G ++  LRL G +  D G
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRG 395


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 341 RQVPAFGTRAVFLRLQGAHGGDDG 270
           RQ+P  G ++  LRL G +  D G
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRG 395


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 692 CSSAVYRVFVDXXLNH 739
           C+ A  R++VD  +NH
Sbjct: 104 CNKAGVRIYVDVIMNH 119


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 235 ATAAAPEVLPTRPSSPPCAPCSLRNTARVPNAGTWR 342
           A+ AA   L    SS  C P  +R     P++G W+
Sbjct: 207 ASKAALAKLRNVHSSSFCIPLPVRVLPNFPSSGHWQ 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,827
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)