Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F20
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.27 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.27 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.27 
AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    28   5.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 450 GGPXXXXGXPPXXGXXPPPPP 512
           GGP    G PP  G  PPPPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPP 731



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 456 PXXXXGXPPXXGXXPPPPPXXXXXXXXXXXXXXXXXXXXXPPPXXXG 596
           P    G PP  G  PPPPP                     PPP   G
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 456 PXXXXGXPPXXGXXPPPPP 512
           P    G PP  G  PPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPP 747


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 450 GGPXXXXGXPPXXGXXPPPPP 512
           GGP    G PP  G  PPPPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPP 731



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 456 PXXXXGXPPXXGXXPPPPPXXXXXXXXXXXXXXXXXXXXXPPPXXXG 596
           P    G PP  G  PPPPP                     PPP   G
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 791



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 456 PXXXXGXPPXXGXXPPPPP 512
           P    G PP  G  PPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPP 747


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 450 GGPXXXXGXPPXXGXXPPPPP 512
           GGP    G PP  G  PPPPP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPP 314



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 456 PXXXXGXPPXXGXXPPPPPXXXXXXXXXXXXXXXXXXXXXPPPXXXG 596
           P    G PP  G  PPPPP                     PPP   G
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPG 374



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 456 PXXXXGXPPXXGXXPPPPP 512
           P    G PP  G  PPPPP
Sbjct: 312 PPPPGGLPPITGGPPPPPP 330


>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 519 PXXGGGGGXXPPGGXXPXXXXAPPP 445
           P  GGGGG    G   P    APPP
Sbjct: 20  PSAGGGGGGCGCGAPPPPPACAPPP 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,694,054
Number of Sequences: 27780
Number of extensions: 176736
Number of successful extensions: 1177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)