Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_F19
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 159 3e-39
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 156 2e-38
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
06_03_0543 + 21967787-21970261 29 5.4
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 9.5
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 9.5
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 159 bits (385), Expect = 3e-39
Identities = 70/122 (57%), Positives = 91/122 (74%)
Frame = -1
Query: 683 IAXRFTPGXFXNXIQAAFREPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 504
IA R TPG F N +Q +F EPR LI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 503 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 324
I IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A
Sbjct: 163 IGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAP 222
Query: 323 EQ 318
Q
Sbjct: 223 AQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 156 bits (378), Expect = 2e-38
Identities = 68/118 (57%), Positives = 88/118 (74%)
Frame = -1
Query: 683 IAXRFTPGXFXNXIQAAFREPRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 504
IA R TPG F N +Q +F EPR LI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 503 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 330
I IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 163 IGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 210 TRCSSCFWSTPCSRRMVCPGTR 145
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = +1
Query: 475 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIXXRGSRNAAWXWLX 654
ED L+ I + S E + ITG V+ S G + + R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 655 KXPGVKRXAIXVHRCA 702
K + + V R A
Sbjct: 64 KRSRINAALLFVSRNA 79
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +1
Query: 373 NKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITG 552
N + T S+ + ST+ +N+ + + + A S + S + G
Sbjct: 373 NSGSGTMSGIDAPSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIG 432
Query: 553 MLTYEASVMG*WSCAGSNTIXXRGSRNAAW 642
+ + S G WS AGSNT G+ ++ W
Sbjct: 433 VASNAGSSSGSWSNAGSNTGTLSGAGSSNW 462
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 360 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 476
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,526,986
Number of Sequences: 37544
Number of extensions: 350187
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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