Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_F18
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.070
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.070
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.070
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = +2
Query: 584 PPPRXXXXXXRRXPPXPXXTXLXXSXPXGRPXPXXPXPXXXPPSXXXRXRRXPVXXVXXP 763
PPPR R+ PP + P P P R PV
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 764 XPLXPPCXLPTXPPXXP 814
P PP P+ PP P
Sbjct: 424 PPSAPPSLPPSAPPSLP 440
Score = 30.7 bits (66), Expect = 0.28
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 390 KKXXPPXPXLGXXXXXXKXXGGGSIXXCXXPPPPPP 497
KK PP P G GS PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 30.7 bits (66), Expect = 0.28
Identities = 32/128 (25%), Positives = 34/128 (26%), Gaps = 10/128 (7%)
Frame = +3
Query: 480 PPPPPPPXXXXXAPKXXGXGGGXXXXXXXYYXXISPPXG---XGXXGAXATPPXP---XX 641
PPPPPPP G G S G G A PP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 642 XXYXXPXPL----XVXAPPVPXXSXXXXXXXXXXGAXXXXXXXXPXXXXPPAXSLXXPPH 809
P PL V PP P + P PP+ PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430
Query: 810 XPPPXXPS 833
PP PS
Sbjct: 431 LPPSAPPS 438
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.070
Identities = 21/79 (26%), Positives = 24/79 (30%)
Frame = +2
Query: 584 PPPRXXXXXXRRXPPXPXXTXLXXSXPXGRPXPXXPXPXXXPPSXXXRXRRXPVXXVXXP 763
P P+ PP P + S P P P P PP P V P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP---VPKP 1107
Query: 764 XPLXPPCXLPTXPPXXPPP 820
PP P+ P P P
Sbjct: 1108 SVAVPPVPAPSGAPPVPKP 1126
Score = 30.3 bits (65), Expect = 0.37
Identities = 27/112 (24%), Positives = 30/112 (26%)
Frame = +3
Query: 486 PPPPPXXXXXAPKXXGXGGGXXXXXXXYYXXISPPXGXGXXGAXATPPXPXXXXYXXPXP 665
PPP P P G + P + A PP P P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP-------SVAAPPVPKPSVAVPPVP 1115
Query: 666 LXVXAPPVPXXSXXXXXXXXXXGAXXXXXXXXPXXXXPPAXSLXXPPHXPPP 821
APPVP S GA P PP + P P P
Sbjct: 1116 APSGAPPVPKPSVAAPPVPVPSGA---PPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/72 (26%), Positives = 23/72 (31%)
Frame = +3
Query: 624 PPXPXXXXYXXPXPLXVXAPPVPXXSXXXXXXXXXXGAXXXXXXXXPXXXXPPAXSLXXP 803
PP P P P+ APPVP + GA P S+ P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP--SIPAP 1079
Query: 804 PHXPPPXXPSXL 839
PP PS +
Sbjct: 1080 SGAPPVPAPSGI 1091
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Frame = +3
Query: 624 PPXPXXXXYXXPXPLXVXAPPVPXXSXXXXXXXXXXGAXXXXXXXXPXXXXP--PAXSLX 797
PP P P P+ APPVP S GA P P PA S
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA---PPVPKPSVAAPPVPAPSSG 1177
Query: 798 XPPHXPP 818
PP P
Sbjct: 1178 IPPVPKP 1184
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/82 (29%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Frame = +2
Query: 584 PPPRXXXXXXRRXPPXPXXTXLXXSXPXGRPXPXXPXPXXXPP-SXXXRXRRXPVXXVXX 760
P P+ PP P S P P P P PP P V
Sbjct: 131 PTPQSELRPPTSAPPRP-------SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 761 PXPLXP--PCXLPTXPPXXPPP 820
P P P P +P PP PPP
Sbjct: 184 P-PSAPSLPSAVPPMPPKVPPP 204
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 480 PPPPPPPXXXXXAPKXXGXG 539
PPPPPPP +PK G
Sbjct: 371 PPPPPPPELLNHSPKSRPLG 390
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/58 (27%), Positives = 17/58 (29%)
Frame = +1
Query: 460 QXXFVXXPPPPPPPXXFXXHQXXXGXGGXXXXXXXXIIX*SPPPXGXXGXXPXXPPXP 633
Q + PPPPPP PPP G G P PP P
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 402 PPXPXLGXXXXXXKXXGGGSIXXCXXPPPPPPP 500
PP P +G G + PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPG---VAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 761 PXPLXPPCXLPTXPPXXPPP 820
P P+ PP + PP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +1
Query: 655 LPSXWXSXPXXSXXXXXTPLXXXPXPARXXXXRXXXPPXXXPLXX-PYXSPXTXPPPXXP 831
+PS W S P+ P + P+ PY SP + PPP P
Sbjct: 161 VPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHPYSSPTSYPPPLCP 220
Query: 832 LXF 840
+
Sbjct: 221 ATY 223
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 656 SXPXGRPXPXXPXPXXXPPS 715
S P G P P P P PPS
Sbjct: 3 SLPPGNPPPPPPPPGFEPPS 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,558,633
Number of Sequences: 5004
Number of extensions: 19116
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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