Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F17
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m...    29   4.2  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.7  
DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    28   9.7  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    28   9.7  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    28   9.7  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       28   9.7  

>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform a
           protein.
          Length = 1040

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 167 GARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 346
           GAR + ++ +    DPN  +R V   E +T L  +    PP  R S +  ++P S     
Sbjct: 710 GARSRAQSTADGWEDPNTTKRYVKDLEKDTPLRPAQL--PPTHRKSALDQTIPASPNSPD 767

Query: 347 ALEAFRHNP 373
           ++  F   P
Sbjct: 768 SINNFHPMP 776


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 432 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 253
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 252 SH--SKRETRRRSP 217
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  HN-TPPGTEVVYRLFRAPTSN*VISGPSEPWCTC*EKNR*HRSPRSKWASTSRLAF 243
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  HN-TPPGTEVVYRLFRAPTSN*VISGPSEPWCTC*EKNR*HRSPRSKWASTSRLAF 243
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  HN-TPPGTEVVYRLFRAPTSN*VISGPSEPWCTC*EKNR*HRSPRSKWASTSRLAF 243
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 79  HN-TPPGTEVVYRLFRAPTSN*VISGPSEPWCTC*EKNR*HRSPRSKWASTSRLAF 243
           HN +P G EV      +   N VI+GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,988
Number of Sequences: 27780
Number of extensions: 393358
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)