Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F15
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
            protein Y18H1A.3 protein.
          Length = 1258

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +3

Query: 591  PSRGLG*SPEAGSVPVSSMEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTXHLRQWGGVV 770
            PSRG   SP  G+   +SM ++T+    P  L    +S+A+  LP +TP   L +W  + 
Sbjct: 959  PSRGSP-SPVDGAAQFTSM-IETS-RRQPQPLGT--SSAAHDHLPAFTPNAKLLEWRSLS 1013

Query: 771  TTFWKVPLI 797
             +   VPL+
Sbjct: 1014 ASLGFVPLV 1022


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 602 PRLESGGWIGPGVFYGGQNSVDGVSRRSDG 691
           PR   GG+ GPG ++ G+N   G  ++  G
Sbjct: 833 PRTGRGGYQGPGSWFPGRNERQGDKQKGSG 862


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,996,572
Number of Sequences: 27780
Number of extensions: 421264
Number of successful extensions: 936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)