Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F13
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    93   3e-20
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    93   3e-20

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 45/93 (48%), Positives = 54/93 (58%)
 Frame = -1

Query: 388 ASXEYDXXEXSITXMGGFPHYGEVXNDFVMIKGCCMGXXXXXXXXXXXXRVHTKRXAXVX 209
           AS ++D  E  IT MGGF  YG V NDFVM+ G   G              HT R A   
Sbjct: 294 ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEP 353

Query: 208 INLXFIDTSSKFGHGXFQTPADKXAFMGTXKKD 110
           ++L +IDT+SKFGHG FQTPA+   F+GT KKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = -3

Query: 575 PVRHXRVVRKVACXGXWHHSRXSFTVARAGQXGYHHRXXMXKKIXRIG 432
           P +  R +RKVAC G WH +   +TVARAG  GY HR  +  KI RIG
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG 286



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 663 QDEMIDCIGVXQGQXIQRVSFXVGTQXSYPRKTXQG 556
           Q+EMID IGV +G+  +  +   GT+   PRKT +G
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTK-RLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 45/93 (48%), Positives = 54/93 (58%)
 Frame = -1

Query: 388 ASXEYDXXEXSITXMGGFPHYGEVXNDFVMIKGCCMGXXXXXXXXXXXXRVHTKRXAXVX 209
           AS ++D  E  IT MGGF  YG V NDFVM+ G   G              HT R A   
Sbjct: 294 ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEP 353

Query: 208 INLXFIDTSSKFGHGXFQTPADKXAFMGTXKKD 110
           ++L +IDT+SKFGHG FQTPA+   F+GT KKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 25/48 (52%), Positives = 30/48 (62%)
 Frame = -3

Query: 575 PVRHXRVVRKVACXGXWHHSRXSFTVARAGQXGYHHRXXMXKKIXRIG 432
           P +  R +RKVAC G WH +   +TVARAG  GY HR  +  KI RIG
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG 286



 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 663 QDEMIDCIGVXQGQXIQRVSFXVGTQXSYPRKTXQG 556
           Q+EMID IGV +G+  +  +   GT+   PRKT +G
Sbjct: 211 QNEMIDVIGVTRGKGNEGTTARWGTK-RLPRKTHRG 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,404
Number of Sequences: 5004
Number of extensions: 27613
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)