Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F11
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.042
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   0.36 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.89 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +2

Query: 566 PPXXXXGGGXPXPXXPPXXFXXXXXPPPXXXXXPPPPXGXGGGXK 700
           PP     GG P P  PP        PPP     PPPP    GG +
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPPAVSAGGSR 791



 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 571 PXXXGGGXPPXPPPPXPFXFXXXXPPP 651
           P    GG PP PPPP         PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 571 PXXXGGGXPPXPPPPXP 621
           P    G  PP PPPP P
Sbjct: 767 PPGVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect(2) = 0.36
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 586 GGXPPXPPPPXP 621
           GG PP PPPP P
Sbjct: 303 GGLPPPPPPPPP 314



 Score = 21.0 bits (42), Expect(2) = 0.36
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +1

Query: 595 PPXPPPPXPFXFXXXXPPP 651
           PP PPP   F      P P
Sbjct: 309 PPPPPPSNDFWKDSNEPAP 327


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 589 GXPPXPPPPXPFXFXXXXPPP 651
           G PP PPPP  F      PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPP 27


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/60 (33%), Positives = 22/60 (36%)
 Frame = -2

Query: 693 PPPXPXGGGGXXXXXGGGXXXKXKXXGGXXGWGXPPPXXXXGGXXKKKKXPXXXXXGGGG 514
           PPP P G GG      GG   +    GG  G+G   P    GG       P     G GG
Sbjct: 200 PPPGPGGFGGF-----GGFGGEGHHHGGHGGFGG-GPGGFEGGPGGFGGGPGGFGGGLGG 253


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
 Frame = +2

Query: 515 PPPPXXKXXGXFFFXXXPPXXXXGGGX--PXPXXPPXXFXXXXXP-PPXXXXXPPPP 676
           PPPP  +  G       PP          P P  PP        P PP     PPPP
Sbjct: 314 PPPPSRRNRGK------PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,244
Number of Sequences: 5004
Number of extensions: 23720
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)