Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_F10
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 245 7e-66
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 245 7e-66
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.59
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 7.3
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 7.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 245 bits (599), Expect = 7e-66
Identities = 122/202 (60%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Frame = -3
Query: 711 EWAREHXEKPIPVDSVFAQDEMIDCIGVTRAKDTK-VSLFVGTQRSYPVRHTKXLRKVAC 535
EWAREH EK + + S F Q+EMID IGVTR K + + GT+R P + + LRKVAC
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVAC 251
Query: 534 IGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 355
IGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++D +EK
Sbjct: 252 IGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKR 304
Query: 354 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 175
ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT+SK
Sbjct: 305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASK 364
Query: 174 FGHGRFQTPADKAAFMGTLKKD 109
FGHGRFQTPA+ F+GTLKKD
Sbjct: 365 FGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 245 bits (599), Expect = 7e-66
Identities = 122/202 (60%), Positives = 146/202 (72%), Gaps = 1/202 (0%)
Frame = -3
Query: 711 EWAREHXEKPIPVDSVFAQDEMIDCIGVTRAKDTK-VSLFVGTQRSYPVRHTKXLRKVAC 535
EWAREH EK + + S F Q+EMID IGVTR K + + GT+R P + + LRKVAC
Sbjct: 193 EWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVAC 251
Query: 534 IGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 355
IGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++D +EK
Sbjct: 252 IGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKR 304
Query: 354 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 175
ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT+SK
Sbjct: 305 ITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASK 364
Query: 174 FGHGRFQTPADKAAFMGTLKKD 109
FGHGRFQTPA+ F+GTLKKD
Sbjct: 365 FGHGRFQTPAEAKQFLGTLKKD 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKXLGVSYGVA 579
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 580 SLCANEK 600
SL AN +
Sbjct: 433 SLPANSR 439
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 367 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +3
Query: 603 TPLYPLPW*HQCSQSFHLGQTQNRQG*VSPXVLWPIHLSRWYXVNWIPYVSLLSLLTAH 779
T LY W H + LG + +P V W + L RW P + L+S L H
Sbjct: 103 TMLYIWSWKHPLYRISILGLFDVK----APYVPWVMVLLRWLRTGIFPLLDLISALIGH 157
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +3
Query: 657 GQTQNRQG*VSPXVLWPIHLSRWYXVNWIPYVSLLSLL 770
G+ + R+G + P + WP+ + + + ++ ++ LL L
Sbjct: 61 GKDEKREGFMYPILRWPLMFTAFLCLTFVAFLYLLDRL 98
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 352 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 480
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 412 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 537
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,175
Number of Sequences: 5004
Number of extensions: 73758
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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