Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F09
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    30   1.9  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    30   1.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.3  

>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 391 GGGGPXKXXXPPPGGFXXXXXGXXXXPPPPP 483
           GGG       PPPGG      G    PPPPP
Sbjct: 654 GGGSSMPMPVPPPGGL----GGFMPPPPPPP 680


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +1

Query: 391 GGGGPXKXXXPPPGGFXXXXXGXXXXPPPPP 483
           GGG       PPPGG      G    PPPPP
Sbjct: 654 GGGSSMPMPVPPPGGL----GGFMPPPPPPP 680


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 397 GGPXKXXXPPPGGFXXXXXGXXXXPPPPPKXXXXXXXXPXKXXXGG 534
           GGP     PPPGG      G    PPPP          P     GG
Sbjct: 740 GGPPPP--PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +1

Query: 394 GGGPXKXXXPPPGGFXXXXXGXXXXPPPP 480
           GG P     PPPGGF     G    PPPP
Sbjct: 766 GGCPPPPPPPPPGGF----KGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 397 GGPXKXXXPPPGGFXXXXXGXXXXPPPPPKXXXXXXXXPXKXXXGG 534
           GGP     PPPGG      G    PPPP          P     GG
Sbjct: 740 GGPPPP--PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +1

Query: 394 GGGPXKXXXPPPGGFXXXXXGXXXXPPPP 480
           GG P     PPPGGF     G    PPPP
Sbjct: 766 GGCPPPPPPPPPGGF----KGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 397 GGPXKXXXPPPGGFXXXXXGXXXXPPPPPKXXXXXXXXPXKXXXGG 534
           GGP     PPPGG      G    PPPP          P     GG
Sbjct: 323 GGPPPP--PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +1

Query: 394 GGGPXKXXXPPPGGFXXXXXGXXXXPPPP 480
           GG P     PPPGGF     G    PPPP
Sbjct: 349 GGCPPPPPPPPPGGF----KGGPPPPPPP 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,693,208
Number of Sequences: 27780
Number of extensions: 165310
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)