Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_F02
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0243 + 1889885-1890049,1890158-1890217,1891113-1891226,189...    29   3.5  

>03_01_0243 +
           1889885-1890049,1890158-1890217,1891113-1891226,
           1897117-1897182,1897272-1897379,1897476-1897559,
           1898042-1898143,1898282-1898395,1898474-1898554,
           1898931-1899050,1899398-1899493
          Length = 369

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 347 HCRRAPPPPLRSLISNLSNTCDLTPLPEWSCEQ 249
           HCR +   P   +  N++   DL  +PEW+ E+
Sbjct: 129 HCRLSLAVPKEGIFENINTLEDLANMPEWTQER 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,334
Number of Sequences: 37544
Number of extensions: 174168
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)