Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_F01
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 32 0.58
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 30 1.8
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 30 1.8
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 30 2.3
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 30 2.3
07_03_1280 + 25434933-25436153 29 4.1
04_01_0006 - 112476-114182,114627-114676,115289-115463 29 4.1
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553... 28 7.1
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 28 7.1
07_02_0009 - 11716174-11716435,11716837-11717459,11718385-117184... 28 9.4
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 28 9.4
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 238 GVRRGSGRWRTAQGTPPYSAGTSLVATGFGYF 333
G RRG+GRWR A+G+ Y GT ++ YF
Sbjct: 523 GGRRGTGRWRRAEGSGDY--GTDNISNTSTYF 552
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -1
Query: 427 SMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTEAFPALSAT---A 257
S D HP S+QPP+ T+ N+ Q + + + Q +K + PA++ T A
Sbjct: 287 SSKEDQHPTT-PPSLQPPETTLDNNTVNQIIPSAKRALQFEKELHIDQPSPAIANTIQVA 345
Query: 256 HSPAAPPQWITVSKGK 209
+ PQ + +SK K
Sbjct: 346 TNQLYHPQQVDLSKEK 361
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 475 PQQKKPTLDDDDFPSLSMGRDDHP-NIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 299
P KP L P SMG + ++G +++QPPK +++S+ ++A K + S
Sbjct: 496 PSPSKP-LSTKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTEEIGTLSPS 554
Query: 298 QRSTE 284
R +
Sbjct: 555 SRGLD 559
>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = -1
Query: 550 QLHSQPASXSNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPK 371
Q+ SQ S+F T+ N IS Q T+ D P + +D P + SV +
Sbjct: 976 QMPSQAPLPSSFS-TRNKENGISEAGQTN--TVAPDGLPGPGVPKDAGPQVAGPSVVKSQ 1032
Query: 370 VTMINSQE----MQALKNNQTQSQPKKSQRSTEAFPAL 269
M + Q L N+Q +SQP++++ A AL
Sbjct: 1033 KNMNEAYNDGPSTQQLPNDQYRSQPREAKEEQGADAAL 1070
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 326 PNPVATKEVPAEYGGVPCAVRHRPLPRRTPAVD 228
PN + T E YGG+ CA+ P+ RT ++D
Sbjct: 433 PNHI-TPEAWGNYGGIKCAMETLPITNRTTSLD 464
>07_03_1280 + 25434933-25436153
Length = 406
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 225 VIHCGGAAGEWAVADSAGNASVLRWDFFGCDW 320
V+ CGG A +++ G AS+ W+F G W
Sbjct: 293 VVACGGRAYVVVLSELLGTASLRLWEFAGGAW 324
>04_01_0006 - 112476-114182,114627-114676,115289-115463
Length = 643
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 217 WRR*STAGVRRGSGRWRTAQGTPPYSAGTSLVAT 318
WRR +AG RRG T GTP G L T
Sbjct: 577 WRRGQSAGRRRGGESEETPVGTPRARGGEPLTPT 610
>12_02_0900 -
24153734-24153943,24154461-24155110,24155198-24155334,
24156595-24157223
Length = 541
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 271 AQGTPPYSAGTSLVATGFGYFLTLAFLD 354
A G PP+S + TG G+ +++AFLD
Sbjct: 76 ASGIPPFSWRKLWLFTGPGFLMSIAFLD 103
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = -1
Query: 484 SIPPQQKKPTLDDDDFPSLSMGRDDHP----NIGASSVQPPKVTMINSQEMQALKNN--- 326
++P +K+P + + +P L+ D H N+G S Q ++ + LK+
Sbjct: 673 NVPESEKQPVQNAEKYPFLTTTIDSHEVPNFNLGFDSSQEVVQHQRGKKQQEHLKDYGSF 732
Query: 325 QTQSQPKKSQRSTEAFPALSATAHSPAA 242
T+ K + + EA + SAT SP A
Sbjct: 733 TTEDYEKVGREADEAIASKSAT-KSPVA 759
>07_02_0009 -
11716174-11716435,11716837-11717459,11718385-11718469,
11719346-11719374
Length = 332
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 418 RDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRS--TEAFPALSATAHSPA 245
+D HP + + + + EM+ N+ P + EA PA +ATA +P
Sbjct: 258 KDSHPELARQTT----AQLTHPSEMRDENENKETPFPAVVMEAPKVEATPAAAATAPAPP 313
Query: 244 APP 236
APP
Sbjct: 314 APP 316
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 435 GKSSSSRVGFFCCGGIEMRFP 497
G SSS +GF CC +M+FP
Sbjct: 456 GGSSSPTIGFRCCRVSQMKFP 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,320
Number of Sequences: 37544
Number of extensions: 329602
Number of successful extensions: 1142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -