Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E22
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   3.2  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.2  
02_04_0316 - 21978330-21979397                                         29   3.2  
03_05_0183 - 21681673-21682524                                         29   4.3  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   4.3  
07_03_0414 + 17892133-17893590                                         28   7.4  

>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 640 TTLHAWNETPCARRYYRXXTVSANRV 717
           TT  AW ETPCA R++     S  RV
Sbjct: 560 TTTEAWVETPCAHRFHSRCLESWARV 585


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 134 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 36
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>02_04_0316 - 21978330-21979397
          Length = 355

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 179 RCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESG 27
           RC   T    +++ FGHL    G     A+ P+ G+   A++A  S+ E G
Sbjct: 261 RCSCGTTFSRKDKLFGHLALFEGHTPAIAE-PNKGVATAAAEASISMMEEG 310


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 346 SQAFIATLLFDPSMSALPIIAKQNSPS 266
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 407 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 300
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +3

Query: 126 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 302
           Q   + V + L S+T+ +       T   H GL+ A  PF WV  P + G    A +  A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334

Query: 303 DIEGSKSNVAMNAWLPQ 353
                KS   +  W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,461,117
Number of Sequences: 37544
Number of extensions: 423312
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)