Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_E21
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0799 + 23282793-23282896,23283090-23283172,23283303-232834... 31 1.4
12_02_0088 + 13475547-13476705,13477801-13477931 31 1.4
12_02_0081 + 13342692-13343514,13343520-13343821 31 1.4
12_02_0080 + 13314740-13315892,13316725-13316732 31 1.4
10_06_0011 - 9581916-9582167,9582523-9582574,9584105-9584331 29 5.5
05_07_0006 - 27001038-27001600,27001713-27001980 28 7.3
03_06_0191 - 32228642-32228949,32229028-32230567 28 7.3
01_01_0094 - 730484-731570,732030-732715 28 7.3
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 9.6
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 9.6
03_05_0543 - 25404630-25405408,25405461-25405605 28 9.6
>12_02_0799 +
23282793-23282896,23283090-23283172,23283303-23283495,
23283618-23283756,23283844-23283894,23284274-23284439,
23284591-23284757,23284857-23285030,23285120-23285215,
23285288-23285425,23285525-23285844,23285924-23286188,
23286332-23286575,23288025-23288106,23288189-23288366
Length = 799
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 413 LSWCPMSVF*AP*HYVWFIPQRQFCLPKLAHLAPSSDLRASSFE 544
++W P++ P + +P RQ+ LPKL A +DL A+ +E
Sbjct: 579 ITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLDAAEYE 622
>12_02_0088 + 13475547-13476705,13477801-13477931
Length = 429
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 RETLLHVSPPGXSLEYLLLPPRSAPTE--APSGLTPRPF 198
R+ LL + PP L L+LP P PSG P PF
Sbjct: 41 RDALLQLRPPPPPLPRLVLPEADGPAFYCVPSGCRPHPF 79
>12_02_0081 + 13342692-13343514,13343520-13343821
Length = 374
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 RETLLHVSPPGXSLEYLLLPPRSAPTE--APSGLTPRPF 198
R+ LL + PP L L+LP P PSG P PF
Sbjct: 41 RDALLQLRPPPPPLPRLVLPEADGPAFYCVPSGCRPHPF 79
>12_02_0080 + 13314740-13315892,13316725-13316732
Length = 386
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 88 RETLLHVSPPGXSLEYLLLPPRSAPTE--APSGLTPRPF 198
R+ LL + PP L L+LP P PSG P PF
Sbjct: 41 RDALLQLRPPPPPLPRLVLPEADGPAFYCVPSGCRPHPF 79
>10_06_0011 - 9581916-9582167,9582523-9582574,9584105-9584331
Length = 176
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 221 GRARRRAQKGLGVSPLGASVGADLGGSSKYSSEXPGGLTWR 99
GR+ +R + V P+ A VG GG + S+ G TWR
Sbjct: 11 GRSAQRLAWCIEVPPVAAEVGTAQGGVASGSAAGGGRPTWR 51
>05_07_0006 - 27001038-27001600,27001713-27001980
Length = 276
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 60 RLTREQLLFTRNPSPRQSSRXLAGVFATTTKICTDGGSK 176
+LT E+ L R P S L +F TTTK+ T GG+K
Sbjct: 159 QLTVEEPLMRRTVCPVPDSA-LRRIFHTTTKVITLGGAK 196
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 106 VSPPGXSLEYLLLPPRSAPTEAPSGL-TPRPFCALRRARPTRY 231
++PP + +LLLPPR A SG P P A + P +
Sbjct: 1 MAPPPATSRFLLLPPRLAAARGISGQPPPSPHAAAPTSTPQAF 43
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 358 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 453
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +1
Query: 322 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 405
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 485 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 321
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 145 PPRSAPTEAPSGLTP---RPFCALRRARP 222
PPR AP AP+ LTP + F A RR P
Sbjct: 155 PPRRAPAPAPAPLTPALSQRFLAERRPAP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,219,236
Number of Sequences: 37544
Number of extensions: 507288
Number of successful extensions: 1478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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