Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E19
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    35   0.012
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    28   1.8  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   7.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.5  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.5  

>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 33/130 (25%), Positives = 54/130 (41%)
 Frame = +3

Query: 162 TLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARR 341
           T+TP+    P S     + + + N  +RR G+ + R    +  +N+R  N  R   A+R 
Sbjct: 149 TITPNFTHTPISNR---KSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRS 205

Query: 342 AAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLXFTG 521
              + P        D N   GS   + + G+    T+   S+  APH  + SG      G
Sbjct: 206 IDSSNPSAEYRD--DINNTFGSQTVSSANGKEVPQTS-EDSSSQAPHHSSSSGHAPSQQG 262

Query: 522 GEAATYRGRD 551
           G   +Y+  D
Sbjct: 263 GNKHSYKKSD 272


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 399 AGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSG---RPLXFTGGEAATYRGRDV 554
           A S R TP+  RS  STA R    +   G   +G    P   +  ++ + RG+ V
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKV 196


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 426 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 292
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 366 SRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGS--APHGLTPSGRPL 509
           S NTP  + QP     +  +    + ST+   +A S   P G  P+   L
Sbjct: 33  SSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASL 82


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 348 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 449
           QT P++  N P+  N PA +  +TP+   +   T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 393 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 310
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,347
Number of Sequences: 5004
Number of extensions: 47875
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)