Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_E18
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 140 3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 140 3e-34
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.7
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 3.0
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 140 bits (338), Expect = 3e-34
Identities = 63/94 (67%), Positives = 75/94 (79%)
Frame = -3
Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 213
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352
Query: 212 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 99.1 bits (236), Expect = 6e-22
Identities = 50/110 (45%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Frame = -2
Query: 741 NGVPWRTKVKWAREHXEKPIPVDSVLPKMKWLTALXSPRAKDTK-VSLLVGTQRSYPVRH 565
NG KV+WAREH EK + + S + + + + R K + + GT+R P +
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKT 242
Query: 564 TKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
+ LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 243 HRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 55.6 bits (128), Expect = 8e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -1
Query: 775 QXRAHIMEIQX*RGTMEDQSEMGQRTXGETYPCRFCVAQDEMVDCIXXXXXXXXXXXTSR 596
Q +AH+MEIQ G++ D+ E + +T + Q+EM+D I T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 595 WHTKKLPRKTHQG 557
W TK+LPRKTH+G
Sbjct: 233 WGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 140 bits (338), Expect = 3e-34
Identities = 63/94 (67%), Positives = 75/94 (79%)
Frame = -3
Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 213
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352
Query: 212 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 99.1 bits (236), Expect = 6e-22
Identities = 50/110 (45%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Frame = -2
Query: 741 NGVPWRTKVKWAREHXEKPIPVDSVLPKMKWLTALXSPRAKDTK-VSLLVGTQRSYPVRH 565
NG KV+WAREH EK + + S + + + + R K + + GT+R P +
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKT 242
Query: 564 TKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 415
+ LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 243 HRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 55.6 bits (128), Expect = 8e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -1
Query: 775 QXRAHIMEIQX*RGTMEDQSEMGQRTXGETYPCRFCVAQDEMVDCIXXXXXXXXXXXTSR 596
Q +AH+MEIQ G++ D+ E + +T + Q+EM+D I T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 595 WHTKKLPRKTHQG 557
W TK+LPRKTH+G
Sbjct: 233 WGTKRLPRKTHRG 245
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 496 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 350
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 714 KWAREHXEKPIPVDSVLPKMKWLTAL---XSPRAKDTKVSLL 598
KW +E+ K +PVD M TAL S AKD +SLL
Sbjct: 3 KWTKENVLKILPVDDESAAMITSTALAVDSSEAAKDYWISLL 44
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 132 HGYTQEGSYSRRSCGYHNPS 73
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 379 SVDALFLITLPSFLWIPW 432
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,192
Number of Sequences: 5004
Number of extensions: 68743
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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