Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E13
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   5.5  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.5  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   5.5  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   7.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  

>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 261 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 121
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = -2

Query: 659  RNKVTLYKTCIRP--VMTYASVVFAHAAPIHLKSFQIIQSRFCRIAVGAPWFVRNVDLHD 486
            RN+ T  + CI P  V+  +  V    API L  +  I S      +G  ++   +DL +
Sbjct: 1256 RNQDTK-QPCIVPLNVVQKSGAVQKLEAPILLPPYDSISSVS---TLGDKYWNLKIDLDN 1311

Query: 485  DLDLESISKYLQSASMRHFDKAARHENPL 399
            + D   + +  Q+ ++  +D+ +  E PL
Sbjct: 1312 NSDYRELLRESQTLTLMPYDRTSSKEEPL 1340


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 451 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 338
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -1

Query: 345 STSP*TRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 166
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 165 RFRSGGRFC 139
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 156 SGGRFCEARLLLGFVLATSSGLSPVSSPTKVKA 58
           S G F +A   +   LA +SGLS + + T VKA
Sbjct: 449 SMGAFADALDTIPLALAENSGLSSIEALTAVKA 481


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 332 KHVISDPPDPLTVLLGTSSTGH 267
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,628
Number of Sequences: 5004
Number of extensions: 56842
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)