Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E10
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    50   5e-07
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    37   0.004
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   1.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   5.4  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    26   7.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   7.2  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
 Frame = -3

Query: 624 VLFGXHETVATTLVYALLMIGRDKNLQDKLYNEXXXXXXXXXRPVTGA--DLPHLRYCEA 451
           +L     T A T+V+ L ++G    + + L+ E                 D+P L Y   
Sbjct: 285 LLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQYKDMPLLNY--- 341

Query: 450 TVLETLRLFPPFPAVLRMADKDLQLSSGKCVVPRGTVCAVSAMVMGRARRLWGPDAAEYR 271
            + ETLRL PP  + +R   +DL +   K V+P      ++A  +      +   A ++ 
Sbjct: 342 VIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNY-LLAAPGLTATEEEYFTHATDFD 400

Query: 270 PERWLAPPHAQPAA-----------------FLAFSYGRRACIGKNYAMAILKTVLASCV 142
           P+RW    +    A                 +L F  GR  CIG+ +A   L T+++  V
Sbjct: 401 PKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHLSTIISKFV 460

Query: 141 RELEFT 124
            +  +T
Sbjct: 461 HDYTWT 466


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 3/152 (1%)
 Frame = -3

Query: 621 LFGXHETVATTLVYALLMIGRDKNLQDKLYNEXXXXXXXXXRPVTGADLPH-LRYCEATV 445
           LF   +  ++ + +   ++    ++  K+  E               DL   + Y  A V
Sbjct: 317 LFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVV 376

Query: 444 LETLRLFPPFPAVLRMADKDLQLSSGKCVVPRGTVCAVSAMVMGRARRLWGPDAAEYRPE 265
            E LRL PP   V     K   ++     VP+  +   +        +++ P+   + P+
Sbjct: 377 KECLRLRPPVLMVPYRVKKAFPITPDY-TVPKDAMVIPTLYGALHDSKVY-PEPETFNPD 434

Query: 264 RWLAPPHAQ--PAAFLAFSYGRRACIGKNYAM 175
           RW     A+  P  ++ F  G   C+G+ YA+
Sbjct: 435 RWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 476 CPTCATAKPRCWRLCACSHLSQPSCVW-LIRTYNSAQVSA 360
           CP C   KP   R+  C H+   SC+   + T  +A+V A
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVETPTAAEVKA 253


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 396 PYARRLGKVGTSAKSPAPWLRSSAGGA 476
           P+A     V +S  SPAPW + ++  A
Sbjct: 408 PWAAASTSVSSSTSSPAPWAKPASSAA 434


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 284 ASGPQSRRARPITIALTAHTVPRGTTHLPELSCKSLSAIRKTAGKGGN 427
           ++ P  RRA P   A TA  +P  T   P    +   A   TA +GG+
Sbjct: 6   SAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGS 53


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 226 PRLQLRQESMHREKLRYGDIEDSVGKLR 143
           P L  R+  +H+E   YGD E S GKL+
Sbjct: 602 PDLVTREYLLHKEDYNYGDPEKS-GKLK 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,489
Number of Sequences: 5004
Number of extensions: 56723
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)