Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E08
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918...    28   7.2  
06_03_1361 + 29568927-29569214                                         28   7.2  
03_01_0020 + 180963-181346,181432-181994,183000-183822                 28   9.5  

>11_08_0089 -
           28288129-28288832,28290702-28290831,28291563-28291856,
           28292000-28292098,28292199-28292285,28292524-28292805
          Length = 531

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 413 GSAVGTTLQNADDATLTAETLFSEIQEQHEAVLGCRTAGPRARGGTSCCC 562
           G   GT    AD        L  E++++   V GCR+A  RA GG   CC
Sbjct: 430 GVGCGTAACGADVNVCCPSAL--EVRDREGRVAGCRSA-CRAMGGDRYCC 476


>06_03_1361 + 29568927-29569214
          Length = 95

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 606 LSHREHSYTLGGCCAQQHDVPPRARGPAVRQP 511
           L HREH +  GG    +    PRAR  A R+P
Sbjct: 58  LLHREHMFRRGGARLGRGRRTPRARARASRRP 89


>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 529 TPGTRRYIMLLCTTASQRITVFSVR*ILNSILTGCLSLRS 648
           T G R   M+LC   ++R+T   V   L + LTG + L S
Sbjct: 45  TGGWRSAAMILCVELNERLTTLGVAVNLVTYLTGTMHLGS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,684,661
Number of Sequences: 37544
Number of extensions: 338690
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)