Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_E07
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.0
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 2.3
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 26 5.4
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 7.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 7.1
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 7.1
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 9.4
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 9.4
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +2
Query: 383 EPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAA---HSAFFAVKPKXDP--TPFR 547
+PP AA+P PS +P P P +++ A +S+ AV P+ P TP +
Sbjct: 172 QPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQ 231
Query: 548 A-PQPHGTP*P 577
A P P P P
Sbjct: 232 ADPLPAPPPPP 242
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 437 RTRHPTAPTGDERELRARAAHSAFFAVKPKXD 532
R RHP G +REL RA S +F K D
Sbjct: 1034 RYRHPVVSCGRKRELILRALCSGYFTNVAKRD 1065
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 404 PPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXD 532
P + P+T H R PTAP E R RA+ A + K D
Sbjct: 83 PAEVVPAT-HKRQVRPTAPRAGRPEPRERASADAGYRRAEKKD 124
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 419 AVGPVVRRRKVA-PVHRSRCVSETTSCGIFPGMECRPIN 306
A V+ RK+A P R R S +S GIF + +P++
Sbjct: 31 ASADVMATRKIAKPKSRKRPTSGVSSPGIFANLAAKPVS 69
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 147 FLTGDYALKKAREALAPQNDYRLNPIEPHHSDSTKPTVPHSARRRLAVAGT 299
F +G ++ + L P RLNP+ P + P++P + + +GT
Sbjct: 75 FQSGPFSKSRRENTLLP----RLNPLAPIGARQPNPSIPQQFSKPINESGT 121
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 546 ALLSLTERHDQVAKPGHGLPXILVLXHAGDDSPQGXVSPQHRDXV 680
A+ S +++H ++A+P +++ + S +PQH D V
Sbjct: 706 AISSKSKQHTEIAQPAFNTTGTVLMKTKSNLSDSALSTPQHSDSV 750
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 144 QFLTGDYALKKAREALAPQNDYRLNPIEP 230
+ +TGDY ++ + L +Y +N IEP
Sbjct: 579 KLITGDYEDRRFNDGLIKIREYLVNDIEP 607
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 252 VSWSRSGGARWGLVGSRSAGQ 190
++W+ G RW L GS +G+
Sbjct: 283 INWTIREGERWALTGSNGSGK 303
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +2
Query: 131 PSPPPISHRRLRLEKGARSTCPA------ERLPTKPHRAPPLRLHETHGTAQCAPKARRR 292
P P P S + LRL RS P+ R P+ H + P L G + P R
Sbjct: 329 PLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPR 388
Query: 293 RY 298
R+
Sbjct: 389 RF 390
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 379 TGATLRRLTTGPTAEYRAPPHP 444
TG TLRR ++G TA R HP
Sbjct: 55 TGDTLRRQSSGATALERLVSHP 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,808
Number of Sequences: 5004
Number of extensions: 60852
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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