Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_E07
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.54
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.54
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.54
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.54
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 1.2
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.6
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 30 1.6
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 30 1.6
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 3.8
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ... 29 3.8
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ... 29 3.8
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou... 29 3.8
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 5.0
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 29 5.0
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 29 5.0
U80954-3|AAK77630.1| 603|Caenorhabditis elegans Defective in ge... 28 6.6
U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in ge... 28 6.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen stru... 28 6.6
AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : short... 28 6.6
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 28 6.6
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 8.8
U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 8.8
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 28 8.8
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 8.8
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 48.4 bits (110), Expect = 6e-06
Identities = 35/147 (23%), Positives = 59/147 (40%)
Frame = +2
Query: 119 KSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARRRRY 298
KSR SPP + RR R ++S PA + ++PP R + ++ P RRRR
Sbjct: 335 KSRSKSPPAPARRR-RSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRS 393
Query: 299 PSC**DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERE 478
PS +P+P + ++ PP + S PR R + +
Sbjct: 394 PSK--SRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAP 451
Query: 479 LRARAAHSAFFAVKPKXDPTPFRAPQP 559
R R+ + A + + P+ ++ P
Sbjct: 452 RRRRSPSKSPQAPRRRRSPSGSKSRSP 478
>Z74033-3|CAA98477.1| 407|Caenorhabditis elegans Hypothetical
protein F38B7.3 protein.
Length = 407
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 380 QEPPCAASPPDQQPSTGH-PRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQ 556
Q+ P A PP QQ + G+ P T +P+AP + R A + P+ P + PQ
Sbjct: 146 QQGP-GAQPPQQQNNGGYVPPTVYPSAPPPVQPGYNPRPASGQSYPSGPQVPPAYGQYPQ 204
Query: 557 PHGTP*P 577
P G P P
Sbjct: 205 P-GYPQP 210
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.54
Identities = 36/116 (31%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Frame = +2
Query: 317 GTPS-PGKXXXXXXXXXXXXGAQEPPCAASPPDQQP----STGHPRTRHPTAPTGDEREL 481
G P PGK GA P A +PP QP G P P P G + E
Sbjct: 119 GKPGKPGKPGAPGAPGAAGKGASAPCEAKTPPPCQPCPAGPPGPPGPDGPAGPAGPDGEA 178
Query: 482 RARAAHSAFFAVKPKXDPTPFRAPQPHGTP*P-GRKTWSWPPXNSGPLXCGR*QPA 646
+ AA S P P GTP P G S P +GP G PA
Sbjct: 179 GSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPA 234
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.54
Identities = 41/153 (26%), Positives = 52/153 (33%), Gaps = 2/153 (1%)
Frame = +2
Query: 131 PSPPPISHRRLRLEKGARSTCPAERLPT-KPHRAPPLRLHETHGTAQCAPKARRRRYPSC 307
P PPP R+ + P PT +P R P + E ++ P+ R P
Sbjct: 329 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR- 387
Query: 308 **DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGD-ERELR 484
G P + PP SPP P TG P P PTG L
Sbjct: 388 ---GGPRKSSEESSESREEPRGPRRSPP-TGSPPTGSPPTGRPPRGSP--PTGSPPTGLP 441
Query: 485 ARAAHSAFFAVKPKXDPTPFRAPQPHGTP*PGR 583
+R A P+ PT P G+P GR
Sbjct: 442 SRQKRQA-----PEDRPT---GSPPTGSPPTGR 466
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAP 553
G ++ P A SPP P G P P A +G A + P PT P
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSP----PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP 282
Query: 554 QPHG--TP*PGRKTWSWPPXNSGPLXCGR*QPARXXLSPAPR*XXAAXAPKR 703
P G P P + PP G G P + SP P + P R
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 334
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.54
Identities = 41/153 (26%), Positives = 52/153 (33%), Gaps = 2/153 (1%)
Frame = +2
Query: 131 PSPPPISHRRLRLEKGARSTCPAERLPT-KPHRAPPLRLHETHGTAQCAPKARRRRYPSC 307
P PPP R+ + P PT +P R P + E ++ P+ R P
Sbjct: 350 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR- 408
Query: 308 **DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGD-ERELR 484
G P + PP SPP P TG P P PTG L
Sbjct: 409 ---GGPRKSSEESSESREEPRGPRRSPP-TGSPPTGSPPTGRPPRGSP--PTGSPPTGLP 462
Query: 485 ARAAHSAFFAVKPKXDPTPFRAPQPHGTP*PGR 583
+R A P+ PT P G+P GR
Sbjct: 463 SRQKRQA-----PEDRPT---GSPPTGSPPTGR 487
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAP 553
G ++ P A SPP P G P P A +G A + P PT P
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSP----PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP 303
Query: 554 QPHG--TP*PGRKTWSWPPXNSGPLXCGR*QPARXXLSPAPR*XXAAXAPKR 703
P G P P + PP G G P + SP P + P R
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 355
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.54
Identities = 41/153 (26%), Positives = 52/153 (33%), Gaps = 2/153 (1%)
Frame = +2
Query: 131 PSPPPISHRRLRLEKGARSTCPAERLPT-KPHRAPPLRLHETHGTAQCAPKARRRRYPSC 307
P PPP R+ + P PT +P R P + E ++ P+ R P
Sbjct: 335 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPR- 393
Query: 308 **DGTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGD-ERELR 484
G P + PP SPP P TG P P PTG L
Sbjct: 394 ---GGPRKSSEESSESREEPRGPRRSPP-TGSPPTGSPPTGRPPRGSP--PTGSPPTGLP 447
Query: 485 ARAAHSAFFAVKPKXDPTPFRAPQPHGTP*PGR 583
+R A P+ PT P G+P GR
Sbjct: 448 SRQKRQA-----PEDRPT---GSPPTGSPPTGR 472
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAP 553
G ++ P A SPP P G P P A +G A + P PT P
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSP----PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP 288
Query: 554 QPHG--TP*PGRKTWSWPPXNSGPLXCGR*QPARXXLSPAPR*XXAAXAPKR 703
P G P P + PP G G P + SP P + P R
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPR 340
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +2
Query: 383 EPPCAASPPDQQPSTGHPRTRHP-TAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQ 556
EPP P P T PRT P T P E R A V P+ +P AP+
Sbjct: 554 EPPRTEPPRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTVPPRTEPPMTEAPR 612
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 6/138 (4%)
Frame = +2
Query: 182 RSTCPAERLPTKP--HRAPPLRLHETHGTAQCAPKARRRRYPSC**DGTP----SPGKXX 343
+++ P ++ P KP + PP++ Q AP P P +P K
Sbjct: 286 QASAPVQQAPPKPVPQQTPPVQQAPPKPAVQQAPTRAAPAPPKPAPQQAPPVQQNPPKPA 345
Query: 344 XXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKP 523
A PP +PP P P ++P P + +A +
Sbjct: 346 VQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVRQNPPMPAVQQAPSSQQATQAPPKPAPQ 405
Query: 524 KXDPTPFRAPQPHGTP*P 577
+ P P+P +P P
Sbjct: 406 QAPPVQQNPPKPTPSPAP 423
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/101 (26%), Positives = 36/101 (35%)
Frame = +2
Query: 317 GTPSPGKXXXXXXXXXXXXGAQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAA 496
G PSPG G+ P P +PS P + P P+ D + +
Sbjct: 174 GPPSPGPVDPSEDPQPS--GSSSP--GPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSP 229
Query: 497 HSAFFAVKPKXDPTPFRAPQPHGTP*PGRKTWSWPPXNSGP 619
V P +P+P P P G P P + PP GP
Sbjct: 230 GP----VDPSDEPSPSDPPGPPGPPGPPTRR---PPGPPGP 263
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = +2
Query: 377 AQEPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQ 556
+ EP P +PS P + P P+ D + + + P+ P Q
Sbjct: 85 SNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPSVEPSEDHQ 144
Query: 557 PHGTP*PG 580
P G P PG
Sbjct: 145 PSGPPSPG 152
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +2
Query: 389 PCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQPHG- 565
PC PP Q + G + P P G +E A + + P P P P G
Sbjct: 160 PCIICPPGPQGAVGQQGPKGPPGPKGKSQERAADGKNGEPGMIGPPGPPGGVGEPGPPGP 219
Query: 566 TP*PGR 583
PGR
Sbjct: 220 AGQPGR 225
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +2
Query: 389 PCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQPHG- 565
PC PP Q + G + P P G +E A + + P P P P G
Sbjct: 160 PCIICPPGPQGAVGQQGPKGPPGPKGKSQERAADGKNGEPGMIGPPGPPGGVGEPGPPGP 219
Query: 566 TP*PGR 583
PGR
Sbjct: 220 AGQPGR 225
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 383 EPP--CAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTP 541
+PP A+ PD+ + HP+ HP+AP + + + P P P
Sbjct: 21 DPPKHVTATHPDELTTASHPQPTHPSAPQDPSPAVPSTPVRVPYPTAPPPIPPAP 75
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +2
Query: 383 EPPCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQ-P 559
+P C PP G P + P P G++ A A PK DP+ + P+ P
Sbjct: 98 KPVCPPGPPGPPGEPGQPGSAGPPGPPGED-----NTATFAPITCPPK-DPSCVKCPEGP 151
Query: 560 HGTP*P 577
G P P
Sbjct: 152 AGPPGP 157
>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform b
protein.
Length = 1047
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 138 LPQFLTGDYALKKAREALAPQNDYRL--NPIEPHHSDSTKPTV-------PHSARRRLAV 290
LP ++ + +KK+ + A + D +L P+ ++ S P + PHSA R+
Sbjct: 913 LPGIISEEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALRKTDT 972
Query: 291 AGTHPVNRTAL 323
+ + P+N TAL
Sbjct: 973 SMSFPINGTAL 983
>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 1, isoform a
protein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 138 LPQFLTGDYALKKAREALAPQNDYRL--NPIEPHHSDSTKPTV-------PHSARRRLAV 290
LP ++ + +KK+ + A + D +L P+ ++ S P + PHSA R+
Sbjct: 893 LPGIISEEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALRKTDT 952
Query: 291 AGTHPVNRTAL 323
+ + P+N TAL
Sbjct: 953 SMSFPINGTAL 963
>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Frame = +3
Query: 138 LPQFLTGDYALKKAREALAPQNDYRL--NPIEPHHSDSTKPTV-------PHSARRRLAV 290
LP ++ + +KK+ + A + D +L P+ ++ S P + PHSA R+
Sbjct: 893 LPGIISEEAPVKKSTKRRASEADSKLPDRPLSDTYTSSFTPKLLPVFAQPPHSALRKTDT 952
Query: 291 AGTHPVNRTAL 323
+ + P+N TAL
Sbjct: 953 SMSFPINGTAL 963
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Frame = +3
Query: 219 PIEPHHSDSTKPTVPHSARRRLAVAGTHP-VNRTALHPRENPAGRRLGDTP*AVHRSHLA 395
P H ++T P P SA+ G+HP P P G +
Sbjct: 319 PTSDGHIEATTPYNP-SAQYPTGKRGSHPGFGPQRPRPGTRPRGNPCDQCSAQPNHCPSG 377
Query: 396 PPHHRTNSRVPGTPAPGTRQPLREMNGSFA 485
PP R PG P + LR +NG ++
Sbjct: 378 PPGPRGRPGPPGFPGQDGPRGLRGLNGGYS 407
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +1
Query: 277 EGSPSPVPILLIGRHSIPGKIPQD----VVSETHRERCTGATLRRLTTGPTAEYRAPPHP 444
E SPSP I S ++P+D V SE+HRE +TT + A H
Sbjct: 1729 ESSPSPAQRSTIVAESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISASGAEQHS 1788
Query: 445 APDS 456
DS
Sbjct: 1789 GQDS 1792
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = +2
Query: 419 PSTGHPRTRHPTAPTGDERELRARAAHSAFFAV---KPKXDPTPFRAPQPHGTP*PGR-K 586
P+ P T P P G + + A A KPK P AP+P P P K
Sbjct: 207 PAPKKPDTEDPADPLGGPKPKDPKLAKKAPAKKPTDKPKSKDVPKEAPKPAEPPKPAAPK 266
Query: 587 TWSWPPXNSGP 619
W PP P
Sbjct: 267 KWK-PPWEEDP 276
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Frame = +2
Query: 419 PSTGHPRTRHPTAPTGDERELR---ARAAHSAFFAVKPKXDPTPFRAPQPHGTP*PGR-K 586
P+ P T P P G ++ A+ A S KPK P P+P P P K
Sbjct: 289 PAPKKPDTEDPADPLGGPKKKDPKLAKKAPSKKPTDKPKPKDLPKEEPKPAEPPKPAAPK 348
Query: 587 TWSWPPXNSGP 619
W PP P
Sbjct: 349 KWK-PPWEEDP 358
>U80954-3|AAK77630.1| 603|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform b protein.
Length = 603
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 116 EKSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETH 256
E S GPS SH R+ ST P + PT PH APP+ H
Sbjct: 491 ESSGGPSR---SHTRVSSFSENSSTVPIMQFPT-PHFAPPMLTPHHH 533
>U80954-2|AAK77629.1| 977|Caenorhabditis elegans Defective in germ
line developmentprotein 3, isoform a protein.
Length = 977
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 116 EKSRGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETH 256
E S GPS SH R+ ST P + PT PH APP+ H
Sbjct: 491 ESSGGPSR---SHTRVSSFSENSSTVPIMQFPT-PHFAPPMLTPHHH 533
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 112 SPSSSQEAPESDITRSVTPLDRVSVNGFPSVKK 14
SP+SS APE T + + D V +G PS K
Sbjct: 1293 SPTSSATAPEVPTTSASSTPDAVEESGIPSTSK 1325
>AY347577-1|AAP97871.1| 322|Caenorhabditis elegans COLlagen
structural gene, probablya critical component of the
embryonically derived outerlayer of the L1 cuticle (31.8
kD) (col-59) protein.
Length = 322
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 466
G Q PC PP Q G P + P P G
Sbjct: 170 GLQSEPCMICPPGAQGLGGAPGAKGPQGPRG 200
>AC006665-1|AAF39908.1| 322|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 14 protein.
Length = 322
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 466
G Q PC PP Q G P + P P G
Sbjct: 170 GLQSEPCMICPPGAQGLGGAPGAKGPQGPRG 200
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQPSTGHPRTRHPTAPTG 466
G Q PC PP Q G + PT P G
Sbjct: 183 GLQSEPCMICPPGPQGLMGQAGKKGPTGPRG 213
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 386 PPCAASPPDQQPSTGHPRTRHPTAPTGDERE 478
PP AS P + G P R PT + +E E
Sbjct: 320 PPVVASRPATAKAPGTPANRQPTPESSEEEE 350
>U53141-5|AAA96107.1| 574|Caenorhabditis elegans Hypothetical
protein C14C11.2 protein.
Length = 574
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 219 PIEPHHSDSTKP-TVPHSARRRLAV-AGTHPVNRTALHPRE 335
PI P +SD++KP P A R L + G+H + + PRE
Sbjct: 76 PIAPVYSDASKPLNSPSVASRILTIPPGSHVLGLPGVDPRE 116
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Frame = +2
Query: 374 GAQEPPCAASPPDQQP---STGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPF 544
GAQ C A PP + G P G + + +F P P P
Sbjct: 90 GAQSQGCPAGPPGPPGYPGAQGEPGLPGIAGQPGSGARVNPQTGRDSFCITCPAGPPGPA 149
Query: 545 RAPQPHGTP----*PGRKTWSWPPXNSGP 619
P G P PG+ ++ P +GP
Sbjct: 150 GTPGAPGAPGNAGAPGQDSFGGGPGPAGP 178
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 27.9 bits (59), Expect = 8.8
Identities = 30/107 (28%), Positives = 36/107 (33%)
Frame = +2
Query: 389 PCAASPPDQQPSTGHPRTRHPTAPTGDERELRARAAHSAFFAVKPKXDPTPFRAPQPHGT 568
P AA+P P+ R GDE+ A AA A + P AP P
Sbjct: 463 PAAAAPAAAAPAATDSGYRSKRNAYGDEQVTPAPAAAPAPADAPVEQAPVAVPAPAPAAA 522
Query: 569 P*PGRKTWSWPPXNSGPLXCGR*QPARXXLSPAPR*XXAAXAPKRAP 709
P P P R ++PAP AA AP AP
Sbjct: 523 PAPAAPA---PAATDSGYRSKRNAYGDEQVTPAP--AAAAEAPADAP 564
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 125 RGPSPPPISHRRLRLEKGARSTCPAERLPTKPHRAPPLRLHETHGTAQCAPKARRRR 295
R PSPP RR+ RS P R ++ PP R ++ P A+RRR
Sbjct: 113 RSPSPP--RRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQR----SRSPPPAKRRR 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,154,662
Number of Sequences: 27780
Number of extensions: 434296
Number of successful extensions: 1735
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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