Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E07
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 378 HRSHLAPPHHRTNSRVPGTPAPGTRQ 455
           H SH A PHH+ ++ +  +  P   Q
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQ 458


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
 Frame = +3

Query: 246 TKPTVPHSARRRLAVAGTHPVNRTALH-PRENPAGRRL----------GDTP*AVHRSHL 392
           ++P  PH   RR A     P N   ++ P+  P   RL          G+    V+ S  
Sbjct: 106 SQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNR-PVYISQP 164

Query: 393 APPHHRTNSRVPGTPAPGTRQPL 461
            PPH R          PG  +P+
Sbjct: 165 RPPHPRLRREAEPEAEPGNNRPV 187



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
 Frame = +3

Query: 249 KPTVPHSARRRLAVAGTHPVNRTALH-PRENPAGRRL----------GDTP*AVHRSHLA 395
           +P  PH   RR A     P N   ++ P+  P   RL          G+    V+ S   
Sbjct: 51  QPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAELEAEPGNNR-PVYISQPR 109

Query: 396 PPHHRTNSRVPGTPAPGTRQPL 461
           PPH R          PG  +P+
Sbjct: 110 PPHPRLRREAEPEAEPGNNRPV 131


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/54 (24%), Positives = 18/54 (33%)
 Frame = +3

Query: 300 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVPGTPAPGTRQPL 461
           HP  R    P+  P   R       ++     PPH R          PG  +P+
Sbjct: 57  HPRLRREAEPKAEPGNNR------PIYIPQPRPPHPRLRREAESEAEPGNNRPV 104


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -3

Query: 337 FSRGWSAVLLTGWVPATASLRRALCGT 257
           FS GW+   + GW           CGT
Sbjct: 178 FSLGWTIAPMFGWNRYVPEGNMTACGT 204


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 139 SPNFSQETTP*KRR 180
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -3

Query: 337 FSRGWSAVLLTGWVPATASLRRALCGT 257
           FS GW+   + GW           CGT
Sbjct: 54  FSLGWTIAPMFGWNRYVPEGNMTACGT 80


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 300 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 428
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 300 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 428
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 753  PPGGHPXDXXQHXXKGAR 700
            PP GHP +   H   G++
Sbjct: 1761 PPVGHPTNASAHSRSGSQ 1778


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,630
Number of Sequences: 438
Number of extensions: 5441
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)