Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E04
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0125 - 19982330-19982538,19983507-19983633,19983978-199840...    29   6.2  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    29   6.2  
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149     29   6.2  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   8.1  
05_05_0175 + 22966151-22967614                                         28   8.1  

>02_04_0125 -
           19982330-19982538,19983507-19983633,19983978-19984053,
           19984993-19985184,19985906-19986474
          Length = 390

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 282 LTPLPEWSCEQSAWWGACGRVLDW 211
           LTP+PE   E + WW   GR + W
Sbjct: 231 LTPIPEVVSE-AGWWAVTGRSMGW 253


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = -3

Query: 762 TGXPPXA-PPXETXPXHXPAXXXTGPAPPTXAXXARDTXERSXPXXXAPRARRXHGXPXS 586
           TG PP + PP    P   P      P PPT             P   AP A      P  
Sbjct: 135 TGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNSGAPPAMYQTNPPQP 194

Query: 585 SXP 577
           + P
Sbjct: 195 AGP 197


>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
          Length = 248

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 753 PPXAPPXETXPXHXPAXXXTGPAPPTXAXXA 661
           P  APP E  P   PA     P PP  A  A
Sbjct: 94  PADAPPPEEAPAAEPAPSEAAPPPPAEADQA 124


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 753  PPXAPPXETXPXHXPAXXXTGPAPP 679
            PP  PP    P H P    +GP+ P
Sbjct: 1162 PPLPPPPPVAPFHPPGPHFSGPSVP 1186


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = -3

Query: 759 GXPPXAPPXETXPXHXPAXXXTGPAPPTXAXXARDTXERSXPXXXAP-RARRXHGXPXSS 583
           G PP +PP      H P    + P  P  A   R       P    P R     G P  +
Sbjct: 102 GAPPSSPPLSPQRTHVPFSWESSPGVPKDAACGRKVVREVLPPRPPPGRGGGGGGSPAHA 161

Query: 582 XPR 574
             R
Sbjct: 162 HAR 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,152
Number of Sequences: 37544
Number of extensions: 187760
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)