Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E02
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0385 + 2915532-2916482                                           30   1.8  
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325     29   3.1  
01_01_0680 + 5217633-5219072                                           29   3.1  
08_01_0569 - 5066760-5067179                                           29   4.1  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    29   5.4  

>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
 Frame = +2

Query: 488 KQEHHGEHGAGRQRVCRGASPGKTSGT-----LPRELPPRHGPGSAPHWTDPSH 634
           K +HHG H    Q      +P   S T      P    P HG G  P W  P +
Sbjct: 123 KSKHHGRHAPPDQPELSPPAPPPESYTPDAPPAPEAASPHHGGGENPAWPRPGN 176


>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
          Length = 321

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 545 SPGKTSGTLPRELPPRH---GPGSAPHWTD 625
           SP +TSG LPR LP RH     G    W+D
Sbjct: 205 SPLRTSGLLPRALPARHLTILSGKITEWSD 234


>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 367 PRVSRVQAAAARHPRRSGASSPTSLILVTSL 275
           PR +   A AA  PRRS ASS   L+L  +L
Sbjct: 25  PRTTTTTAGAAPAPRRSSASSRLHLLLTAAL 55


>08_01_0569 - 5066760-5067179
          Length = 139

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 391 RLGEAGSAPRVSRVQAAAARHPRRSGASSPTSLILVTSL 275
           RLG A +A  V+ ++ A  R  RR+G+S     +L+ +L
Sbjct: 29  RLGMASAAVAVAALEGAQGRRRRRAGSSGAGGAVLLPAL 67


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 430 AFISILWQMSVSSRLGEAGSAPR---VSRVQAAAARHPRRSGA 311
           A + ++W  +  +R+GE G  P    VSR ++    H  ++GA
Sbjct: 279 AIVKVIWDNNSKNRIGEEGGFPHLIYVSREKSPGHHHHYKAGA 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,049
Number of Sequences: 37544
Number of extensions: 293607
Number of successful extensions: 1260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)