Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_E02
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    28   0.11 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 755 NWPNDMQT*TFKFGFRMHNSDEMDFVIDKRIYSM 654
           +WP D       FG  +H+ +E++  +DK+ + M
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 314 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 216
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 752 WPNDMQT*TFKFGFRMHNSDEMDFVI--DKRIYSM---FESGAWXVTDL 621
           +P D QT   KFG    N D++   +  +K    +   ++SG W + ++
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINV 206


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 622 CPVRCRARTVARWKLAWQCS 563
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 330 WRAAAACTRDTRGALPASPSRLDT 401
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 545 SPGKTSGTLPRELPPRHGPGSAPHWTDPS 631
           +P + S   P + PP  GP  AP   +PS
Sbjct: 33  APQRGSPPNPSQGPPPGGPPGAPPSQNPS 61


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 627 GSVQCGAEPGPWRGGSSRGNVPDVFPGDAPRH 532
           G  +C  +PG +R       +P   P  AP++
Sbjct: 292 GFTECRCDPGYFRAEKDPKKMPCTQPPSAPQN 323


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 470 LAARH*TTTSCGFSVH 423
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,354
Number of Sequences: 438
Number of extensions: 2324
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)